From 0cb2833d7210bd6e4ce492a3525ee74dc2057aac Mon Sep 17 00:00:00 2001 From: Frederick Muriuki Muriithi Date: Tue, 10 Jun 2025 17:01:16 -0500 Subject: Pass on the publication to the next job. --- scripts/load_phenotypes_to_db.py | 2 +- uploader/phenotypes/views.py | 1 + 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/scripts/load_phenotypes_to_db.py b/scripts/load_phenotypes_to_db.py index 8339ea9..8f49e10 100644 --- a/scripts/load_phenotypes_to_db.py +++ b/scripts/load_phenotypes_to_db.py @@ -358,7 +358,7 @@ def load_data(conn: mysqldb.Connection, job: dict) -> int: int(_job_metadata["dataset_id"])) # 1. Just retrive the publication: Don't create publications for now. _publication = fetch_publication_by_id( - conn, int(_job_metadata.get("publicationid", "0"))) or {"Id": 0} + conn, int(_job_metadata.get("publication_id", "0"))) or {"Id": 0} # 2. Save all new phenotypes: # -> return phenotype IDs bundle = Path(_job_metadata["bundle_file"]) diff --git a/uploader/phenotypes/views.py b/uploader/phenotypes/views.py index 65d9371..82b46ff 100644 --- a/uploader/phenotypes/views.py +++ b/uploader/phenotypes/views.py @@ -709,6 +709,7 @@ def load_data_to_database( "population_id": population["Id"], "dataset_id": dataset["Id"], "bundle_file": _meta["bundle"], + "publication_id": _meta["publicationid"], "authserver": oauth2client.authserver_uri(), "token": token["access_token"], "success_handler": ( -- cgit v1.2.3