| Age | Commit message (Expand) | Author |
|---|---|---|
| 2023-08-23 | Add all transformers as inputs to transform-with-documentation...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-23 | Update how NCBI genewiki entries are transformed...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-23 | Update how symbols from GeneRIF_BASIC are transformed...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-23 | Add foaf prefix when transforming generif data...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-23 | Update how gn-specific genewiki entries are transformed...Each comment is identified using a unique uuid so that we can identify it's metadata I.e time, author, symbol, etc. | Munyoki Kilyungi |
| 2023-08-21 | Replace gnt:traitName with rdfs:label...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-21 | Delete gnt:hasAcknowledgement from InfoFiles...We fetch all our metadata from the Datasets table. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-21 | Add missing function...* examples/dataset-metadata.scm (remap-species-identifiers): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-21 | Remove hard-coded paths...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-21 | Rename dump -> transform...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-21 | Remove "dump-" prefix...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-21 | Rename define-dump -> define-transformer...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-21 | Replace inbredSet with set as the string-identifier...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-21 | Move dumps related to datasets to one place...* examples/dump-dataset-metadata.scm: Add dump-gene-chip, dump-publishfreeze, dump-genofreeze, dump-probesetfreeze * examples/dump-genotype.scm: Delete dump-genofreeze. * examples/dump-phenotype.scm: Delete dump-publishfreeze. * examples/dump-probesetfreeze.scm: Delete file | Munyoki Kilyungi |
| 2023-08-21 | Rename inbredSet -> set...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-19 | Add traitName...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-19 | Point ttl path to /export/data/genenetwork-virtuoso/...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-19 | Rename inbredSet identifier...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-19 | Add short name of an inbredSet as an altName...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-17 | Rename gnt:species -> gnt:belongsToSpecies...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-17 | Update genotype rdf transformation...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-17 | Update how phenotypes are transformed...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-15 | Rename gnt:molecularTrait -> gnt:hasTissue...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-15 | Add missing skos prefix...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-15 | Add "probeset_" prefix to probesets...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-15 | Rename dump-probeset-metadata -> dump-probeset-data...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-15 | Remove "xsd:double" annotation...A probeset' specificity and BLAT_score can be 0. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-15 | Dump probeset summary stats...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-15 | Rename probeset dataset name...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-15 | Introduce phenotype/genotype/probeset Dataset as a category...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-15 | Update probeset dump...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-15 | Update how probesetfreeze metadata is dumped...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-15 | Replace "used" with "uses" in ontology...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-15 | Update how genotypes are dumped...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-15 | Use prism, fabio and dct ontologies to represent a publication...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-15 | Dump publishfreeze data...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-15 | Remove explicity cast when dumping strains...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-15 | Delete explicit sql-level utf-8 conversions...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-12 | Add comment on Strain table | Pjotr Prins |
| 2023-08-09 | Update how phenotypes are dumped...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-07 | Update phenotype and publishfreeze dump...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-07 | Replace gnt:name/shortName with skos:label/altLabel...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-07 | Update publish-freeze dump...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-07 | Update how published datasets are dumped...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-07 | Replace gdmt:hasTitleInfo with skos:prefLabel...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-07 | Fix typo...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-07 | Update tissue dump...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-07 | Dump molecular traits...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-07 | Add extra metadata to gnc: and gnt: items...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-04 | Annotate terms related to species...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
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index : gn-transform-databases | |
| Data transformers for GeneNetwork (particularly to RDF) |
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