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author | Munyoki Kilyungi | 2023-08-17 18:23:41 +0300 |
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committer | Munyoki Kilyungi | 2023-08-17 18:23:41 +0300 |
commit | 2d2e570528380084e4cea5a5fcaff6049295227d (patch) | |
tree | d9f3aeaae41c2c5290ebc4d42ec8fced6621d01f /examples | |
parent | 2180d25701a2ab56f7fb0a20f6e113c23c6fcb25 (diff) | |
download | gn-transform-databases-2d2e570528380084e4cea5a5fcaff6049295227d.tar.gz |
Rename gnt:species -> gnt:belongsToSpecies
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'examples')
-rwxr-xr-x | examples/dump-probeset-data.scm | 2 | ||||
-rwxr-xr-x | examples/dump-species-metadata.scm | 12 |
2 files changed, 8 insertions, 6 deletions
diff --git a/examples/dump-probeset-data.scm b/examples/dump-probeset-data.scm index 7ab723d..54615bc 100755 --- a/examples/dump-probeset-data.scm +++ b/examples/dump-probeset-data.scm @@ -94,6 +94,8 @@ '(("gn:" "<http://genenetwork.org/id/>") ("gnc:" "<http://genenetwork.org/category/>") ("gnt:" "<http://genenetwork.org/id/>") + ("skos:" "<http://www.w3.org/2004/02/skos/core#>") + ("owl:" "<http://www.w3.org/2002/07/owl#>") ("rdf:" "<http://www.w3.org/1999/02/22-rdf-syntax-ns#>") ("rdfs:" "<http://www.w3.org/2000/01/rdf-schema#>") ("xsd:" "<http://www.w3.org/2001/XMLSchema#>"))) diff --git a/examples/dump-species-metadata.scm b/examples/dump-species-metadata.scm index 2f229e9..3bbda51 100755 --- a/examples/dump-species-metadata.scm +++ b/examples/dump-species-metadata.scm @@ -102,10 +102,10 @@ At this point it is not very clear how Name, Name2, Symbol and Alias are used. (left-join Species "ON Strain.SpeciesId = Species.SpeciesId"))) (schema-triples (gnc:strain skos:broader gnc:species) - (gnt:species rdfs:domain gnc:strain) - (gnt:species skos:definition "This resource belongs to this species") - (gnt:species a owl:ObjectProperty) - (gnt:species skos:definition "This resource belongs to this species") + (gnt:belongsToSpecies rdfs:domain gnc:strain) + (gnt:belongsToSpecies skos:definition "This resource belongs to this species") + (gnt:belongsToSpecies a owl:ObjectProperty) + (gnt:belongsToSpecies skos:definition "This resource belongs to this species") (gnt:alias rdfs:domain gnc:strain) (gnt:alias a owl:ObjectProperty) (gnt:symbol rdfs:domain gnc:strain) @@ -119,7 +119,7 @@ At this point it is not very clear how Name, Name2, Symbol and Alias are used. #:separator "" #:proc string-capitalize-first) (set rdf:type 'gnc:strain) - (set gnt:species + (set gnt:belongsToSpecies (string->identifier "" (remap-species-identifiers (field Species Fullname)) #:separator "" #:proc string-capitalize-first)) @@ -170,7 +170,7 @@ At this point it is not very clear how Name, Name2, Symbol and Alias are used. (set gnt:family (field InbredSet Family)) (set gnt:mappingMethod (field MappingMethod Name)) (set gnt:code (field InbredSet InbredSetCode)) - (set gnt:species + (set gnt:belongsToSpecies (string->identifier "" (remap-species-identifiers (field Species Fullname)) #:separator "" #:proc string-capitalize-first)) |