diff options
author | Munyoki Kilyungi | 2023-08-21 14:31:52 +0300 |
---|---|---|
committer | Munyoki Kilyungi | 2023-08-21 14:31:52 +0300 |
commit | e25db8edf8615f59d0682841fde8d43367ebfa53 (patch) | |
tree | 1050b589e84f77c007470296367e44dbf4106dfb /examples | |
parent | 3b9f1f53722e4866309d1555639c347c7bbacc97 (diff) | |
download | gn-transform-databases-e25db8edf8615f59d0682841fde8d43367ebfa53.tar.gz |
Rename inbredSet -> set
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'examples')
-rwxr-xr-x | examples/dump-dataset-metadata.scm | 8 | ||||
-rwxr-xr-x | examples/dump-genotype.scm | 2 | ||||
-rwxr-xr-x | examples/dump-phenotype.scm | 4 | ||||
-rwxr-xr-x | examples/dump-probesetfreeze.scm | 2 | ||||
-rwxr-xr-x | examples/dump-species-metadata.scm | 16 |
5 files changed, 16 insertions, 16 deletions
diff --git a/examples/dump-dataset-metadata.scm b/examples/dump-dataset-metadata.scm index 2f03dfd..e732772 100755 --- a/examples/dump-dataset-metadata.scm +++ b/examples/dump-dataset-metadata.scm @@ -76,9 +76,9 @@ (gnc:genotypeDataset rdfs:subClassOf gnc:dataset) (gnc:phenotypeDataset rdfs:subClassOf gnc:dataset) (gnc:probesetDataset rdfs:subClassOf gnc:dataset) - (gnt:belongsToInbredSet rdfs:domain gnc:dataset) - (gnt:belongsToInbredSet a owl:ObjectProperty) - (gnt:belongsToInbredSet skos:definition "The InbredSet this resource belongs to") + (gnt:belongsToSet rdfs:domain gnc:dataset) + (gnt:belongsToSet a owl:ObjectProperty) + (gnt:belongsToSet skos:definition "The InbredSet this resource belongs to") (gnt:hasTissue rdfs:domain gnc:dataset) (gnt:hasTissue a owl:ObjectProperty) (gnt:hasTissue skos:definition "Tissues this resource has") @@ -158,7 +158,7 @@ (set gdmt:hasDatasetIdentifierSubType (format #f "GN~a" (field InfoFiles GN_AccesionId))) (set gdmt:hasRightsInfo (string-downcase (field DatasetStatus DatasetStatusName))) - (set gnt:belongsToInbredSet + (set gnt:belongsToSet (string->identifier "inbredSet" (field InbredSet Name) #:separator "" diff --git a/examples/dump-genotype.scm b/examples/dump-genotype.scm index d4849d7..04f1af0 100755 --- a/examples/dump-genotype.scm +++ b/examples/dump-genotype.scm @@ -54,7 +54,7 @@ (set dct:created (annotate-field (field GenoFreeze CreateTime) '^^xsd:date)) - (set gnt:belongsToInbredSet + (set gnt:belongsToSet (string->identifier "inbredSet" (field InbredSet Name) #:separator "" diff --git a/examples/dump-phenotype.scm b/examples/dump-phenotype.scm index 35f96b3..f5a8c3c 100755 --- a/examples/dump-phenotype.scm +++ b/examples/dump-phenotype.scm @@ -41,7 +41,7 @@ (set dct:created (annotate-field (field PublishFreeze CreateTime) '^^xsd:date)) - (set gnt:belongsToInbredSet + (set gnt:belongsToSet (string->identifier "inbredSet" (field InbredSet Name) #:separator "" @@ -82,7 +82,7 @@ (field ("CONCAT(IFNULL(InbredSet.Name, PublishXRef.InbredSetId), '_', PublishXRef.Id)" Phenotype))) (set rdf:type 'gnc:phenotype) - (set gnt:belongsToInbredSet + (set gnt:belongsToSet (string->identifier "inbredSet" (field InbredSet Name) #:separator "" diff --git a/examples/dump-probesetfreeze.scm b/examples/dump-probesetfreeze.scm index fab41b4..50307bf 100755 --- a/examples/dump-probesetfreeze.scm +++ b/examples/dump-probesetfreeze.scm @@ -100,7 +100,7 @@ (string->identifier "tissue" (field Tissue Short_Name))) - (set gnt:belongsToInbredSet + (set gnt:belongsToSet (string->identifier "inbredSet" (field InbredSet Name) #:separator "" diff --git a/examples/dump-species-metadata.scm b/examples/dump-species-metadata.scm index ca51ed2..a1c942e 100755 --- a/examples/dump-species-metadata.scm +++ b/examples/dump-species-metadata.scm @@ -146,25 +146,25 @@ At this point it is not very clear how Name, Name2, Symbol and Alias are used. (left-join MappingMethod "ON InbredSet.MappingMethodId=MappingMethod.Id"))) (schema-triples - (gnc:inbredSet skos:broader gnc:species) - (gnc:inbredSet skos:definition "A set of terms used to describe an inbred set") + (gnc:set skos:broader gnc:species) + (gnc:set skos:definition "A set of terms used to describe an set, which can be inbredSet, outbredSet etc etc.") (gnt:geneticType a owl:ObjectProperty) - (gnt:geneticType rdfs:domain gnc:inbredSet) + (gnt:geneticType rdfs:domain gnc:set) (gnt:code a owl:ObjectProperty) - (gnt:code rdfs:domain gnc:inbredSet) + (gnt:code rdfs:domain gnc:set) ;; Already defined as an owl prop in dump-species - (gnt:family rdfs:domain gnc:inbredSet) + (gnt:family rdfs:domain gnc:set) (gnt:phenotype a owl:ObjectProperty) - (gnt:phenotype rdfs:domain gnc:inbredSet) + (gnt:phenotype rdfs:domain gnc:set) (gnt:genotype a owl:ObjectProperty) (gnt:genotype rdfs:domain gnt:inbredSet) (gnt:mappingMethod a owl:ObjectProperty) - (gnt:mappingMethod rdfs:domain gnc:inbredSet)) + (gnt:mappingMethod rdfs:domain gnc:set)) (triples (string->identifier "inbredSet" (field InbredSet Name) #:separator "" #:proc string-capitalize-first) - (set rdf:type 'gnc:inbredSet) + (set rdf:type 'gnc:set) (set rdfs:label (field InbredSet FullName)) (set skos:altLabel (field InbredSet Name)) (set gnt:geneticType (field InbredSet GeneticType)) |