gn-transform-databases - Data transformers for GeneNetwork (particularly to RDF)

Age	Commit message (Expand)	Author
2023-06-28	Add species mapping to wikidata to schema	Pjotr Prins
2023-06-26	Add "-m manifest.scm" flag to guix shell commands	Munyoki Kilyungi
2023-06-24	Fix documentation errors that were leading to confusion	Frederick Muriuki Muriithi
2023-06-24	Add some missing dependencies	Frederick Muriuki Muriithi
2023-06-21	Fix failing tests	Munyoki Kilyungi
2023-06-19	Chunk probeset dump	Munyoki Kilyungi
2023-06-15	Change the transaction log mode to 'autocommit' when deleting graph	Munyoki Kilyungi
2023-06-12	Add a dataset's full name when dumping	Munyoki Kilyungi
2023-06-12	Use PublishFreeze Name as a fallback for InfoPageName	Munyoki Kilyungi
2023-06-12	Annotate a phenotype dataset with 'dataset:	Munyoki Kilyungi
2023-06-12	Replace "Unknown" in Publication fields with an empty string	Munyoki Kilyungi
2023-06-12	Annotate publications without a pmid with "unpublished"	Munyoki Kilyungi
2023-06-12	Use "publication:" as an identifier for publications	Munyoki Kilyungi
2023-06-12	Remove check for confidentiality/publicity during dataset dump	Munyoki Kilyungi
2023-06-12	Add geoPlatfrom to dataset dump	Munyoki Kilyungi
2023-06-12	Add missing Species join when dumping datasets	Munyoki Kilyungi
2023-06-12	Use the correct title for the a dataset	Munyoki Kilyungi
2023-06-12	Rename AboutProcessing alias to AboutDataProcessing	Munyoki Kilyungi
2023-06-12	Replace citations to source from Datasets instead of InfoFiles	Munyoki Kilyungi
2023-06-12	Rename sql-alias of GN notes during dataset dump	Munyoki Kilyungi
2023-06-12	Add rdf defs for datasetOfSpecies	Munyoki Kilyungi
2023-06-12	Add publicationTitle to dataset dump	Munyoki Kilyungi
2023-06-12	Make geoSeries a link during dataset dump	Munyoki Kilyungi
2023-06-12	Minor identation fix	Munyoki Kilyungi
2023-06-12	Add organization to dataset dump	Munyoki Kilyungi
2023-06-12	Use NCBI taxonomy browser instead of uniprot	Munyoki Kilyungi
2023-06-12	Cast longtext fields to fix broket utf-8 characters	Munyoki Kilyungi
2023-06-12	Remove dead comments	Munyoki Kilyungi
2023-06-12	Remove "^[Nn]one$" from some fields from the InfoFiles table	Munyoki Kilyungi
2023-06-12	Default to InfoFiles with the Dataset being a fallback for citations	Munyoki Kilyungi
2023-06-12	Make ((g/ph)enotype/probeset)Dataset subset of Dataset	Munyoki Kilyungi
2023-05-30	Dump OMIM as a normal string without any annotation	Munyoki Kilyungi
2023-05-30	Fix broken utf-8 strings in abstract field	Munyoki Kilyungi
2023-05-30	Add probeset as an extra prefix	Munyoki Kilyungi
2023-05-30	Delete unused prefixes	Munyoki Kilyungi
2023-05-30	Replace species with inbredSet metadata when dumping info-files	Munyoki Kilyungi
2023-05-30	Only dump public data	Munyoki Kilyungi
2023-05-30	Allow upleading all files in a directory to virtuoso	Munyoki Kilyungi
2023-05-30	Replace PUT with a POST when uploading data in virtuoso	Munyoki Kilyungi
2023-05-30	Sanitize a probeset's description	Munyoki Kilyungi
2023-05-30	Update the probeset's identifier(object)	Munyoki Kilyungi
2023-05-30	Make a probeset's tissue multiset	Munyoki Kilyungi
2023-05-30	Make a probeset's alias a multiset	Munyoki Kilyungi
2023-05-30	Move probeset metadata used for a given experiment to it's own dump	Munyoki Kilyungi
2023-05-26	Use a phenotype's abbreviation as it's name	Munyoki Kilyungi
2023-05-26	Make tissue a multi-set during the probeset dump	Munyoki Kilyungi
2023-05-26	Remove some metadata from the probeset dump	Munyoki Kilyungi
2023-05-26	Create a new probesetfreeze dump	Munyoki Kilyungi
2023-05-26	Allow load-rdf script to read in data from a dir	Munyoki Kilyungi
2023-05-26	Return an empty string if a dataset doesn't have a name	Munyoki Kilyungi