diff options
| author | Munyoki Kilyungi | 2023-05-31 16:06:56 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2023-06-12 19:06:36 +0300 |
| commit | f5ad3e1b7c283d10f605221501cb234cb5933a68 (patch) | |
| tree | f711a94f9d21ae2d261e769c2bf59aef886652c6 | |
| parent | 2260b56a4f8e896ea9912efe98a8b74f57660b16 (diff) | |
| download | gn-transform-databases-f5ad3e1b7c283d10f605221501cb234cb5933a68.tar.gz | |
Make ((g/ph)enotype/probeset)Dataset subset of Dataset
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| -rwxr-xr-x | examples/dump-dataset-metadata.scm | 1 | ||||
| -rwxr-xr-x | examples/dump-phenotype.scm | 3 | ||||
| -rwxr-xr-x | examples/dump-probesetfreeze.scm | 3 |
3 files changed, 5 insertions, 2 deletions
diff --git a/examples/dump-dataset-metadata.scm b/examples/dump-dataset-metadata.scm index ef4adf0..37e0f2a 100755 --- a/examples/dump-dataset-metadata.scm +++ b/examples/dump-dataset-metadata.scm @@ -93,6 +93,7 @@ (left-join GeneChip "USING (GeneChipId)")) "WHERE GN_AccesionId IS NOT NULL AND ((PublishFreeze.public > 0 AND PublishFreeze.confidentiality < 1) OR (GenoFreeze.public > 0 AND GenoFreeze.confidentiality < 1) OR (ProbeSetFreeze.public > 0 AND ProbeSetFreeze.confidentiality < 1))") (schema-triples + (gn:dataset rdfs:range rdfs:Literal) (gn:datasetOfInvestigator rdfs:domain gn:dataset) (gn:datasetOfInvestigator rdfs:range foaf:Person) (gn:datasetOfInbredSet rdfs:domain gn:dataset) diff --git a/examples/dump-phenotype.scm b/examples/dump-phenotype.scm index 113c367..d7d940f 100755 --- a/examples/dump-phenotype.scm +++ b/examples/dump-phenotype.scm @@ -34,7 +34,8 @@ (gn:name rdfs:range rdfs:Literal) (gn:fullName rdfs:range rdfs:Literal) (gn:shortName rdfs:range rdfs:Literal) - (gn:createTime rdfs:range rdfs:Literal)) + (gn:createTime rdfs:range rdfs:Literal) + (gn:phenotypeDataset rdf:subClassOf gn:dataset)) (triples (string->identifier "dataset" (field PublishFreeze Name)) (set rdf:type 'gn:phenotypeDataset) (set gn:name (field PublishFreeze Name)) diff --git a/examples/dump-probesetfreeze.scm b/examples/dump-probesetfreeze.scm index e1fe572..fb46120 100755 --- a/examples/dump-probesetfreeze.scm +++ b/examples/dump-probesetfreeze.scm @@ -39,7 +39,8 @@ "WHERE ProbeSetFreeze.public > 0 AND InfoFiles.InfoPageName IS NULL GROUP BY ProbeFreeze.Id") (schema-triples (gn:avgMethod rdfs:range rdfs:Literal) - (gn:dataScale rdfs:range rdfs:Literal)) + (gn:dataScale rdfs:range rdfs:Literal) + (gn:probesetDataset rdf:subClassOf gn:dataset)) (triples (ontology 'probeset: (regexp-substitute/global #f "[^A-Za-z0-9:]" |