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| author | Munyoki Kilyungi | 2023-05-29 14:27:59 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2023-05-30 11:51:30 +0300 |
| commit | 0546748145e0753057b0d3694d47fad1537e4375 (patch) | |
| tree | c8e24f9ad56696450240582b706592cd3e739118 | |
| parent | 9df0828255632582f515d5d869a3a06f8eda735b (diff) | |
| download | gn-transform-databases-0546748145e0753057b0d3694d47fad1537e4375.tar.gz | |
Replace species with inbredSet metadata when dumping info-files
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| -rwxr-xr-x | examples/dump-dataset-metadata.scm | 8 |
1 files changed, 3 insertions, 5 deletions
diff --git a/examples/dump-dataset-metadata.scm b/examples/dump-dataset-metadata.scm index ebaea52..9d575df 100755 --- a/examples/dump-dataset-metadata.scm +++ b/examples/dump-dataset-metadata.scm @@ -84,9 +84,9 @@ (left-join PublishFreeze "ON InfoFiles.InfoPageName = PublishFreeze.Name") (left-join GenoFreeze "ON InfoFiles.InfoPageName = GenoFreeze.Name") (left-join ProbeSetFreeze "ON InfoFiles.InfoPageName = ProbeSetFreeze.Name") + (left-join InbredSet "ON InfoFiles.InbredSetId = InbredSet.InbredSetId") (left-join Datasets "USING (DatasetId)") (left-join DatasetStatus "USING (DatasetStatusId)") - (left-join Species "USING (SpeciesId)") (left-join Tissue "USING (TissueId)") (left-join Investigators "USING (InvestigatorId)") (left-join AvgMethod "USING (AvgMethodId)") @@ -95,8 +95,6 @@ (schema-triples (gn:datasetOfInvestigator rdfs:domain gn:dataset) (gn:datasetOfInvestigator rdfs:range foaf:Person) - (gn:datasetOfSpecies rdfs:domain gn:dataset) - (gn:datasetOfSpecies rdfs:range gn:species) (gn:datasetOfInbredSet rdfs:domain gn:dataset) (gn:datasetOfInbredSet rdfs:range gn:inbredSet) (gn:datasetOfTissue rdfs:domain gn:dataset) @@ -144,8 +142,8 @@ (field InfoFiles GN_AccesionId)))) (set gn:datasetStatusName (string-downcase (field DatasetStatus DatasetStatusName))) - (set gn:datasetOfSpecies (string->identifier "species" - (field Species FullName BinomialName))) + (set gn:datasetOfInbredSet + (string->identifier "inbredSet" (field InbredSet Name InbredSetName))) (set gn:datasetOfTissue (string->identifier "tissue" (field Tissue Short_Name))) (set gn:normalization |