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| author | Munyoki Kilyungi | 2023-06-06 14:48:12 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2023-06-12 19:06:36 +0300 |
| commit | 632b922a580bc08affbc7700a7f892868e3606ac (patch) | |
| tree | 4cab7bbd98c3b4d3e9afb35e864f0e1134245906 | |
| parent | 9030321f1417b2ac2e3ba0517606f705503c8ca9 (diff) | |
| download | gn-transform-databases-632b922a580bc08affbc7700a7f892868e3606ac.tar.gz | |
Use "publication:" as an identifier for publications
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| -rwxr-xr-x | examples/dump-phenotype.scm | 1 | ||||
| -rwxr-xr-x | examples/dump-publication.scm | 9 |
2 files changed, 6 insertions, 4 deletions
diff --git a/examples/dump-phenotype.scm b/examples/dump-phenotype.scm index a493fa2..51ecb64 100755 --- a/examples/dump-phenotype.scm +++ b/examples/dump-phenotype.scm @@ -133,6 +133,7 @@ (prefix "up:" "<http://purl.uniprot.org/core/>") (prefix "xsd:" "<http://www.w3.org/2001/XMLSchema#>") (prefix "dataset:" "<http://genenetwork.org/dataset/>") + (prefix "publication:" "<http://genenetwork.org/publication/>") (newline) (dump-publishfreeze db) (dump-phenotypes db)) diff --git a/examples/dump-publication.scm b/examples/dump-publication.scm index e4c57ad..ef2a36d 100755 --- a/examples/dump-publication.scm +++ b/examples/dump-publication.scm @@ -39,11 +39,11 @@ pmid))) (publication-id (field Publication Id))) (if (string-null? pmid) - (string->identifier "publication" - (number->string publication-id)) - (ontology 'pubmed: pmid))) + (ontology 'publication: + publication-id) + (ontology 'publication: pmid))) (set rdf:type 'gn:publication) - (set gn:pubMedId (field ("IFNULL(PubMed_ID, '')" pubmedId))) + (set gn:pubMedId (ontology 'pubmed: (field ("IFNULL(PubMed_ID, '')" pubmedId)))) (set gn:title (field Publication Title)) (set gn:journal (field Publication Journal)) (set gn:volume (field Publication Volume)) @@ -85,6 +85,7 @@ (prefix "uniprot:" "<http://purl.uniprot.org/uniprot/>") (prefix "up:" "<http://purl.uniprot.org/core/>") (prefix "xsd:" "<http://www.w3.org/2001/XMLSchema#>") + (prefix "publication:" "<http://genenetwork.org/publication/>") (newline) (dump-publication db)) #:encoding "utf8"))) |