index
:
gn-transform-databases
master
Data transformers for GeneNetwork (particularly to RDF)
about
summary
refs
log
tree
commit
diff
log msg
author
committer
range
Age
Commit message (
Expand
)
Author
2023-06-12
Annotate a phenotype dataset with 'dataset:
Munyoki Kilyungi
2023-06-12
Replace "Unknown" in Publication fields with an empty string
Munyoki Kilyungi
2023-06-12
Annotate publications without a pmid with "unpublished"
Munyoki Kilyungi
2023-06-12
Use "publication:" as an identifier for publications
Munyoki Kilyungi
2023-06-12
Remove check for confidentiality/publicity during dataset dump
Munyoki Kilyungi
2023-06-12
Add geoPlatfrom to dataset dump
Munyoki Kilyungi
2023-06-12
Add missing Species join when dumping datasets
Munyoki Kilyungi
2023-06-12
Use the correct title for the a dataset
Munyoki Kilyungi
2023-06-12
Rename AboutProcessing alias to AboutDataProcessing
Munyoki Kilyungi
2023-06-12
Replace citations to source from Datasets instead of InfoFiles
Munyoki Kilyungi
2023-06-12
Rename sql-alias of GN notes during dataset dump
Munyoki Kilyungi
2023-06-12
Add rdf defs for datasetOfSpecies
Munyoki Kilyungi
2023-06-12
Add publicationTitle to dataset dump
Munyoki Kilyungi
2023-06-12
Make geoSeries a link during dataset dump
Munyoki Kilyungi
2023-06-12
Minor identation fix
Munyoki Kilyungi
2023-06-12
Add organization to dataset dump
Munyoki Kilyungi
2023-06-12
Use NCBI taxonomy browser instead of uniprot
Munyoki Kilyungi
2023-06-12
Cast longtext fields to fix broket utf-8 characters
Munyoki Kilyungi
2023-06-12
Remove dead comments
Munyoki Kilyungi
2023-06-12
Remove "^[Nn]one$" from some fields from the InfoFiles table
Munyoki Kilyungi
2023-06-12
Default to InfoFiles with the Dataset being a fallback for citations
Munyoki Kilyungi
2023-06-12
Make ((g/ph)enotype/probeset)Dataset subset of Dataset
Munyoki Kilyungi
2023-05-30
Dump OMIM as a normal string without any annotation
Munyoki Kilyungi
2023-05-30
Fix broken utf-8 strings in abstract field
Munyoki Kilyungi
2023-05-30
Add probeset as an extra prefix
Munyoki Kilyungi
2023-05-30
Delete unused prefixes
Munyoki Kilyungi
2023-05-30
Replace species with inbredSet metadata when dumping info-files
Munyoki Kilyungi
2023-05-30
Only dump public data
Munyoki Kilyungi
2023-05-30
Allow upleading all files in a directory to virtuoso
Munyoki Kilyungi
2023-05-30
Replace PUT with a POST when uploading data in virtuoso
Munyoki Kilyungi
2023-05-30
Sanitize a probeset's description
Munyoki Kilyungi
2023-05-30
Update the probeset's identifier(object)
Munyoki Kilyungi
2023-05-30
Make a probeset's tissue multiset
Munyoki Kilyungi
2023-05-30
Make a probeset's alias a multiset
Munyoki Kilyungi
2023-05-30
Move probeset metadata used for a given experiment to it's own dump
Munyoki Kilyungi
2023-05-26
Use a phenotype's abbreviation as it's name
Munyoki Kilyungi
2023-05-26
Make tissue a multi-set during the probeset dump
Munyoki Kilyungi
2023-05-26
Remove some metadata from the probeset dump
Munyoki Kilyungi
2023-05-26
Create a new probesetfreeze dump
Munyoki Kilyungi
2023-05-26
Allow load-rdf script to read in data from a dir
Munyoki Kilyungi
2023-05-26
Return an empty string if a dataset doesn't have a name
Munyoki Kilyungi
2023-05-26
Remove unnecessary fields from probeset dump
Munyoki Kilyungi
2023-05-26
Sanitize a generif entry from GN
Munyoki Kilyungi
2023-05-26
Add genotype dump
Munyoki Kilyungi
2023-05-26
Fix broken utf-8 chars when dumping an investigator's names
Munyoki Kilyungi
2023-05-26
Remove an investigator's email/phone from dump for privacy reasons
Munyoki Kilyungi
2023-05-26
Update a dataset's subject identifier to be a gn url
Munyoki Kilyungi
2023-05-26
Annotate createtime field correctly with xsd:date
Munyoki Kilyungi
2023-05-26
Replace broken char-sets with an empty string
Munyoki Kilyungi
2023-05-26
Replace dump.scm with separete dumps for several tables
Munyoki Kilyungi
[next]