gn-auth - GN authentication and authorization service

Age	Commit message (Collapse)	Author
18 hours	Use AuthorisationError to indicate error condition. HEAD main	Frederick Muriuki Muriithi

18 hours	Replace hard-coded email check with check against privileges	Frederick Muriuki Muriithi
	Fix the check: rather than using a hard-coded email to check for authorisation, we instead check against the privileges the user has on the resource, or whether they have global privileges allowing them to act on any data.
18 hours	Fetch a single resource ID: delete data from one resource at a time.	Frederick Muriuki Muriithi

8 days	Add placeholder check for privileges	Frederick Muriuki Muriithi
	For now, only one user is allowed to delete data from Genenetwork. To get the code online as quickly as possible, in order to test out the system, I have elected to do a quick and dirty check that prevents everyone except @acenteno from being able to delete data from the system. To fix this, I'll need to actually implement (a) new role(s) to grant certain users special permissions on ALL the data in the system regardless of who owns it.
11 days	Leave notes for tasks that need doing.	Frederick Muriuki Muriithi

11 days	Proof-of-concept: Delete linked phenotype data.	Frederick Muriuki Muriithi

2025-06-09	Use more flexible check for authorisation.	Frederick Muriuki Muriithi
	Use the more flexible check for authorisation that a user has on a specific resource.
2025-06-09	Allow linking of data by passing the raw ids too.	Frederick Muriuki Muriithi

2024-11-22	Use code in gn_libs for MySQL/MariaDB connection.	Frederick Muriuki Muriithi
	Update the application to use the gn_libs code for connecting to the database, rather than using a local module.
2024-03-13	Remove unused imports.	Munyoki Kilyungi
	Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13	Define Group using a frozen dataclass.	Munyoki Kilyungi
	* gn_auth/auth/authorisation/data/genotypes.py: Import dataclasses.asdict. (link_genotype_data): Replace dictify with asdict. * gn_auth/auth/authorisation/data/mrna.py: Import dataclasses.asdict. (link_mrna_data): Replace dictify with asdict. * gn_auth/auth/authorisation/data/phenotypes.py: Import dataclasses.asdict. (link_phenotype_data): Replace dictify with asdict. * gn_auth/auth/authorisation/resources/groups/models.py: Import dataclass. (Group): Use frozen dataclass. (Group.dictify): Delete. (GroupRole.dictify): Replace dictify with asdict. * gn_auth/auth/authorisation/resources/groups/views.py: Import dataclasses.asdict. Remove dictify import. (list_groups): Replace dictify with asdict. (create_group): Ditto. * gn_auth/auth/authorisation/resources/views.py: (resource_users): Replace dictify with asdict. * gn_auth/auth/authorisation/users/views.py: Import dataclasses.asdict. Remove dictify import. (user_details): Replace dictify with asdict. (user_group): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-26	Move `groups` package under `resources` package	Frederick Muriuki Muriithi
	With user groups being resources that users can act on (with the recent changes), this commit moves the `groups` module to under the `resources` module. It also renames the `*_resources.py` modules by dropping the `_resources` part since the code is under the `resources` module anyway.
2023-08-08	Use relative imports to break circular import errors	Frederick Muriuki Muriithi

2023-08-08	Fix issues caught by linter	Frederick Muriuki Muriithi
	* Add a .pylintrc to silence annoying messages * Fix imports * Add missing `parse_db_url` function * Add a new `gn_auth.auth.db.redis` module
2023-08-07	Change imports to new unified db module.	Frederick Muriuki Muriithi

2023-08-07	Update module name/path	Frederick Muriuki Muriithi
	Change from gn3 to gn_auth
2023-08-04	Copy over files from GN3 repository.	Frederick Muriuki Muriithi