| Age | Commit message (Collapse) | Author |
|---|
|
|
|
In preparation for migrating to pyproject.toml (from setup.py and
friends) we need to have only one top-level package. This will also
help in improving testing and checks down the line, since everything
will be relative to one single top-level directory.
|
|
|
|
To avoid failures later due to missing keys, we initialise the initial
value used in reduce to a dict with empty tuples for every key.
|
|
Fetch resources using the dataset names (and trait names where
relevant) to simplify the code, and make it clearer what the endpoint
actually does.
|
|
|
|
|
|
|
|
Return a count of the total number of resources that the user has
access to even if we are only interested in a few of the records.
|
|
|
|
|
|
Fix the check: rather than using a hard-coded email to check for
authorisation, we instead check against the privileges the user has on
the resource, or whether they have global privileges allowing them to
act on any data.
|
|
|
|
For now, only one user is allowed to delete data from Genenetwork. To
get the code online as quickly as possible, in order to test out the
system, I have elected to do a quick and dirty check that prevents
everyone except @acenteno from being able to delete data from the
system.
To fix this, I'll need to actually implement (a) new role(s) to grant
certain users special permissions on **ALL** the data in the system
regardless of who owns it.
|
|
|
|
|
|
|
|
Use the more flexible check for authorisation that a user has on a
specific resource.
|
|
|
|
|
|
|
|
Update the application to use the gn_libs code for connecting to the
database, rather than using a local module.
|
|
|
|
The system uses JSON as the default communication format, so we use
the form's json attribute to get any data sent.
|
|
|
|
This reverts commit f5e833c0d72eaec80425203b15210ed304cc4811.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
|
|
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
|
|
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
|
|
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
|
|
* gn_auth/auth/authorisation/data/genotypes.py: Import
dataclasses.asdict.
(link_genotype_data): Replace dictify with asdict.
* gn_auth/auth/authorisation/data/mrna.py: Import dataclasses.asdict.
(link_mrna_data): Replace dictify with asdict.
* gn_auth/auth/authorisation/data/phenotypes.py: Import
dataclasses.asdict.
(link_phenotype_data): Replace dictify with asdict.
* gn_auth/auth/authorisation/resources/groups/models.py: Import
dataclass.
(Group): Use frozen dataclass.
(Group.dictify): Delete.
(GroupRole.dictify): Replace dictify with asdict.
* gn_auth/auth/authorisation/resources/groups/views.py: Import
dataclasses.asdict. Remove dictify import.
(list_groups): Replace dictify with asdict.
(create_group): Ditto.
* gn_auth/auth/authorisation/resources/views.py:
(resource_users): Replace dictify with asdict.
* gn_auth/auth/authorisation/users/views.py: Import
dataclasses.asdict. Remove dictify import.
(user_details): Replace dictify with asdict.
(user_group): Ditto.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
|
|
* gn_auth/auth/authentication/users.py: Import dataclass. Remove
NamedTuple and Tuple import.
(User): Use a frozen dataclass.
(User.get_user_id): Delete.
(User.dictify): Ditto.
* gn_auth/auth/authorisation/data/views.py: Import dataclasses.dict.
(authorisation): Replace user._asdict() with asdict(user).
(metadata_resources): Ditto.
* gn_auth/auth/authorisation/resources/groups/views.py:
(group_members): Replace dictify with asdict.
* gn_auth/auth/authorisation/resources/models.py: Import
dataclasses.asdict.
(assign_resource_user): Replace dictify(user) with asdict(user).
(unassign_resource_user): Ditto.
* gn_auth/auth/authorisation/resources/views.py:
(resource_users): Replace dictify with asdict.
* gn_auth/auth/authorisation/users/masquerade/views.py: Import
dataclasses.asdict.
(masquerade): Replace masq_user._asdict() with asdict(masq_user).
* gn_auth/auth/authorisation/users/views.py:
(list_all_users): Replace dictify with asdict.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
|
|
* gn_auth/auth/authorisation/data/views.py: (metadata_resources): New
end-point for authorising metadata data.
* gn_auth/auth/authorisation/resources/models.py: Import sqlite3.Row.
(__metadata_resource_data__): New function.
(__assign_resource_owner_role__): Add __metadata_resource_data__
to the "resource_data_function" map.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
|
|
* gn_auth/auth/authorisation/data/views.py (authorisation): Fix typo.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
|
|
|
|
With user groups being resources that users can act on (with the
recent changes), this commit moves the `groups` module to under the
`resources` module.
It also renames the `*_resources.py` modules by dropping the
`_resources` part since the code is under the `resources` module
anyway.
|
|
|
|
* Add a .pylintrc to silence annoying messages
* Fix imports
* Add missing `parse_db_url` function
* Add a new `gn_auth.auth.db.redis` module
|
|
Copy over missing modules and functions to completely disconnect
gn-auth from GN3.
|
|
|
|
Change from gn3 to gn_auth
|
|
|
