| Age | Commit message (Expand) | Author |
|---|---|---|
| 2024-10-02 | Use pathlib to fetch the directory path for tests.•••* tests/fixtures/rdf.py: import pathlib. (rdf_setup): Use pathlib to get the dir name for the tests folder. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-10-02 | Fix pylint failure.•••* tests/fixtures/rdf.py (rdf_setup): Fix C0301. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-10-02 | feat: cleaner handling of virtuoso process | John Nduli |
| 2024-10-02 | Fix typo in comments.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-10-02 | Spin up a local virtuoso instance to run RDF tests against.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-10-02 | Add virtuoso ini file to be used during testing.•••tests/fixtures/virtuoso.py: New file. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-10-02 | Set a default password for sparql.•••* tests/fixtures/rdf.py: Import config. (get_sparql_auth_conf): Load GN3 config from GN3_SECRETS and GN3_CONF if the respective envs are set. Set sane defaults for sparql_conf. (rdf_setup): Remove "fxtr_app_config". * tests/unit/db/rdf/test_wiki.py (test_get_wiki_entries_by_symbol): Ditto. (test_get_comment_history): Ditto. (test_update_wiki_comment): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-28 | Lint: fix some linting errors. | Frederick Muriuki Muriithi |
| 2024-09-27 | Skip failing test. | Frederick Muriuki Muriithi |
| 2024-09-27 | Use existing fixture to retrieve settings. | Frederick Muriuki Muriithi |
| 2024-09-23 | Revert "Add pytest.mark.unit_test for all rdf test-cases."•••This reverts commit f6d9b0cfb842b53e8777e9918549f1ed1ee5892e. Failing tests because of how we run tests using guix. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-23 | Add pytest.mark.unit_test for all rdf test-cases.•••This makes sure that all the test correctly run in CD. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-23 | Handle missing GN3_SECRETS for CI testing.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-23 | Fix or ignore pylint errors.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-23 | Load GN3_SECRETS after loading GN3_CONF settings.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-23 | Remove dead comment.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-23 | Make sure the the test graph is empty before running rdf tests.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-23 | Use test fixtures to set-up a test named graph.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-23 | Add RDF test cases.•••* pytest.ini: Add rdf pytest marker. * tests/test_data/ttl-files/test-data.ttl: New file with turtle test data for RIF editing. * tests/unit/db/rdf/test_wiki.py (test_sanitize_result): New test case. (test_get_comment_history): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-12 | Fix failing tests after merging in Pjotr's pull request. | Frederick Muriuki Muriithi |
| 2024-09-12 | rqtl_wrapper: minor fixes | Pjotr Prins |
| 2024-09-12 | Fix Rqtl test | Pjotr Prins |
| 2024-09-12 | Change behavior of do_paths_exist to actually throw useful error | Pjotr Prins |
| 2024-09-11 | Add test cases for wiki.__sanitize_result.•••* tests/unit/db/rdf/test_wiki.py (test_sanitize_result): New file. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-03 | Make pylint fixes. | Alexander_Kabui |
| 2024-09-03 | Add tests for fetching and populating references. | Alexander_Kabui |
| 2024-09-03 | Add unittests for formatting bib info. | Alexander_Kabui |
| 2024-05-27 | Pylint fixes. | Alexander_Kabui |
| 2024-05-27 | Delete llm obsolete unittests | Alexander_Kabui |
| 2024-01-17 | fix pylint errors | Alexander_Kabui |
| 2024-01-17 | temp fix:disable pylint check | Alexander_Kabui |
| 2024-01-17 | Feature/gn llm refactoring (#147)•••* refactor code for processing response from fahamu client * Add tests for gn-llm | Alexander Kabui |
| 2023-10-10 | Remove authentication from GN3•••Authentication should be handled by the auth server (gn-auth) and thus, this commit removes code handling user authentication from the GN3 system. | Frederick Muriuki Muriithi |
| 2023-09-05 | Fix C3001: Lambda expression assigned to a variable•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-09-05 | Remove un-necessary string concatenation•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-09-05 | Remove pylint skip•••* gn3/auth/authentication/oauth2/models/oauth2token.py (introspect_token, check_permission): Delete "pylint: disable=[no-self-use]". R0022: Useless option value for 'disable', 'no-self-use' was moved to an optional extension, see https://pylint.pycqa.org/en/latest/whatsnew/2/2.14/summary.html#removed-checkers. * gn3/auth/authentication/oauth2/grants/authorisation_code_grant.py (delete_authorization_code): Ditto. * tests/unit/test_heatmaps.py (test_cluster_traits): Delete "pylint: disable=R0201". R0022: Useless option value for 'disable', 'no-self-use' was moved to an optional extension, see https://pylint.pycqa.org/en/latest/whatsnew/2/2.14/summary.html#removed-checkers. * tests/unit/computations/test_partial_correlations.py (test_tissue_correlation): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-09-05 | Remove unused import•••* tests/unit/test_file_utils.py: Delete gn3.cache_ipfs_file Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-09-05 | Replace "escape_string" with safe-query parameters•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-09-05 | Delete IPFS tests•••* tests/unit/test_file_utils.py (test_cache_ipfs_file_cache_hit, test_cache_ipfs_file_cache_miss): Delete. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-17 | Fix tests to work with changes | zsloan |
| 2023-08-04 | Remove unused import | Frederick Muriuki Muriithi |
| 2023-08-04 | Remove tests for deleted function. | Frederick Muriuki Muriithi |
| 2023-08-02 | Remove ORM-dependent `insert` function•••Remove the object-relation-mapping dependent `insert` function to prevent it being used in the code down the line. | Frederick Muriuki Muriithi |
| 2023-08-02 | Remove ORM-dependent `fetchall` and `fetchone` functions•••Remove Object-Relational Mapping dependent function, `fetchall` and `fetchone` so as to prevent theirs use in the code moving forward. | Frederick Muriuki Muriithi |
| 2023-07-19 | Extract code dealing with ProbeSets to their own module. | Frederick Muriuki Muriithi |
| 2023-07-11 | Revert "Skip tests broken by Python-3.10 temporarily"•••This reverts commit f52247c15f3694f3dd5fd0fd79c3e15376137e07. | Frederick Muriuki Muriithi |
| 2023-07-05 | Skip tests broken by Python-3.10 temporarily•••Skip the tests that have been broken by the migrations to Python-3.10 temporarily, until we can fix them. | Frederick Muriuki Muriithi |
| 2023-07-05 | Update test: create throw-away variable•••* Commit `b529c700` changes the return value to a tuple of values rather than a single string value. Handle that in the test. | Frederick Muriuki Muriithi |
| 2023-05-30 | Fix linting errors and failing tests•••* scripts/register_sys_admin.py: fix linting error * tests/unit/auth/fixtures/oauth2_client_fixtures.py: hash client secret in database. The code expects it hashed in the database. | Frederick Muriuki Muriithi |
| 2023-05-25 | Set whether resource is publicly viewable on creation | Frederick Muriuki Muriithi |
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