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authorAlexander_Kabui2024-09-03 12:31:04 +0300
committerAlexander_Kabui2024-09-03 12:31:04 +0300
commita190f6aa0ddd745e46f6ca059d06a3fca5ffbf2e (patch)
treea91bf74b10a2b9d6a8c195bda8aba032ca571143 /tests
parent3c3f91e6cfd0f4557101dfb0729d0b4f6bad3604 (diff)
downloadgenenetwork3-a190f6aa0ddd745e46f6ca059d06a3fca5ffbf2e.tar.gz
Make pylint fixes.
Diffstat (limited to 'tests')
-rw-r--r--tests/unit/test_llm.py24
1 files changed, 13 insertions, 11 deletions
diff --git a/tests/unit/test_llm.py b/tests/unit/test_llm.py
index 51b4921..8fbaba6 100644
--- a/tests/unit/test_llm.py
+++ b/tests/unit/test_llm.py
@@ -1,4 +1,5 @@
"""Test cases for procedures defined in llms """
+# pylint: disable=C0301
import pytest
from gn3.llms.process import fetch_pubmed
from gn3.llms.process import parse_context
@@ -36,6 +37,7 @@ def test_parse_context():
@pytest.mark.unit_test
def test_format_bib_info():
+ """Test for formatting bibliography info """
mock_fahamu_bib_info = [
{
"author": "J.m",
@@ -52,17 +54,17 @@ def test_format_bib_info():
"2015 - Differential regional and cellular distribution of TFF3 peptide in the human brain"
]
- assert all([format_bibliography_info(data) == expected
+ assert all((format_bibliography_info(data) == expected
for data, expected
- in zip(mock_fahamu_bib_info, expected_result)])
+ in zip(mock_fahamu_bib_info, expected_result)))
@pytest.mark.unit_test
def test_fetching_pubmed_info(monkeypatch):
-
- def mock_load_file(filename, dir_path):
+ """Test for fetching and populating pubmed data with pubmed info"""
+ def mock_load_file(_filename, _dir_path):
return {
- "12121" : {
+ "12121": {
"Abstract": "items1",
"Author": "A1"
}
@@ -83,22 +85,22 @@ def test_fetching_pubmed_info(monkeypatch):
},
{
"title": "Aging",
- "year" : "2014",
+ "year": "2014",
"doc_id": "12122"
}
]
- data = [ {
+ data = [{
"title": "Genes",
"year": "2014",
"doi": "https/article/genes/12121",
"doc_id": "12121",
- },
- {
+ },
+ {
"title": "Aging",
- "year" : "2014",
+ "year": "2014",
"doc_id": "12122"
- }]
+ }]
assert (fetch_pubmed(data, "/pubmed.json", "data/")
== expected_results)