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genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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Author
2024-08-26
refactor: split out utlities into their modules and change api to use metadata
John Nduli
2024-04-30
Add an endpoint to query a dataset's git history from it's id.
Munyoki Kilyungi
2024-04-30
Add a method for saving a dataset's metadata to git.
Munyoki Kilyungi
2024-04-30
Rename retrieve_dataset_metadata to retrieve_metadata.
Munyoki Kilyungi
2024-04-30
Remove an f-string that doesn't have any interpolated variables.
Munyoki Kilyungi
2024-04-29
Prevent error when group isn't in parents/f1s JSON file
zsloan
2024-04-11
Include parents/f1s in default samplelist + add boolean options for them
zsloan
2024-02-25
Construct genofile_path using pathlib module.
Munyoki Kilyungi
2024-02-15
Use correct names for dataset entries in json result.
Munyoki Kilyungi
2024-02-13
Fetch extra metadata from text-files when fetching datasets.
Munyoki Kilyungi
2024-02-13
Retrieve metadata from text files given a path.
Munyoki Kilyungi
2023-10-27
Fix pylint error.
Munyoki Kilyungi
2023-10-27
Add functions that wrap around the common jsonld patterns.
Munyoki Kilyungi
2023-10-27
Break up long line.
Munyoki Kilyungi
2023-10-27
Ignore construct result for mypy compliance
Munyoki Kilyungi
2023-10-27
Abstract out (sparql) CONSTRUCT into a function.
Munyoki Kilyungi
2023-10-27
Delete gn3.db.rdf.sparql_query.
Munyoki Kilyungi
2023-10-27
Delete db.rdf.get_url_local_name.
Munyoki Kilyungi
2023-10-27
Implement "GET /metadata/phenotypes/:name".
Munyoki Kilyungi
2023-10-27
Delete get_dataset_metadata.
Munyoki Kilyungi
2023-10-27
Implement "GET /metadata/publications/:name".
Munyoki Kilyungi
2023-10-27
Add fabio: and prism: to PREFIXES.
Munyoki Kilyungi
2023-10-27
Implement "GET /metadata/datasets/:name".
Munyoki Kilyungi
2023-10-27
Add missing dcat: prefix.
Munyoki Kilyungi
2023-10-27
Derive RDF_PREFIXES string from PREFIXES.
Munyoki Kilyungi
2023-10-27
Remove get_url_local_name when processing result keys.
Munyoki Kilyungi
2023-10-27
Simplify CONSTRUCT query when fetching a dataset's metadata.
Munyoki Kilyungi
2023-10-27
Update RDF prefixes.
Munyoki Kilyungi
2023-10-06
Make argument mandatory
Frederick Muriuki Muriithi
2023-09-21
Fix query in update_cross_reference
zsloan
2023-09-05
Delete un-used import
Munyoki Kilyungi
2023-09-05
Fix C3001: Lambda expression assigned to a variable
Munyoki Kilyungi
2023-09-05
Remove un-necessary string concatenation
Munyoki Kilyungi
2023-09-05
Replace "escape_string" with safe-query parameters
Munyoki Kilyungi
2023-09-05
Remove type annotations for "none_case_attrs" variables
Munyoki Kilyungi
2023-08-24
Change get_pheno_csv_sample_data to use group ID instead of phenotype ID
zsloan
2023-08-17
Fix query for fetching DataId when inserting ProbeSet data
zsloan
2023-08-17
Fix a couple remaining issues with function parameters
zsloan
2023-08-17
Combine pheno/mrna update functions + some other fixes
zsloan
2023-08-17
Fix queries for fetching group names
zsloan
2023-08-17
Fix fetch_trait query for phenotypes
zsloan
2023-08-17
Fix a few misnamed tables in mrna delete/insert functions
zsloan
2023-08-17
Implement ProbeSet sample data editing
zsloan
2023-08-17
Fix probeset sample data and CSV sample data functions
zsloan
2023-08-17
Fix query for retrieving mrna dataset group name
zsloan
2023-08-17
Fix get_mrna_sample_data query
zsloan
2023-08-17
Fix mrna group name query
zsloan
2023-08-17
Remove Id select from probeset metadata query, since it's included in cols
zsloan
2023-08-17
Add function for retrieving mRNA Assay group name
zsloan
2023-08-17
Make several sample_data fetching functions specific to phenotype or mrna ass...
zsloan
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