genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Expand)	Author
2024-08-26	refactor: split out utlities into their modules and change api to use metadata	John Nduli
2024-04-30	Add an endpoint to query a dataset's git history from it's id.	Munyoki Kilyungi
2024-04-30	Add a method for saving a dataset's metadata to git.	Munyoki Kilyungi
2024-04-30	Rename retrieve_dataset_metadata to retrieve_metadata.	Munyoki Kilyungi
2024-04-30	Remove an f-string that doesn't have any interpolated variables.	Munyoki Kilyungi
2024-04-29	Prevent error when group isn't in parents/f1s JSON file	zsloan
2024-04-11	Include parents/f1s in default samplelist + add boolean options for them	zsloan
2024-02-25	Construct genofile_path using pathlib module.	Munyoki Kilyungi
2024-02-15	Use correct names for dataset entries in json result.	Munyoki Kilyungi
2024-02-13	Fetch extra metadata from text-files when fetching datasets.	Munyoki Kilyungi
2024-02-13	Retrieve metadata from text files given a path.	Munyoki Kilyungi
2023-10-27	Fix pylint error.	Munyoki Kilyungi
2023-10-27	Add functions that wrap around the common jsonld patterns.	Munyoki Kilyungi
2023-10-27	Break up long line.	Munyoki Kilyungi
2023-10-27	Ignore construct result for mypy compliance	Munyoki Kilyungi
2023-10-27	Abstract out (sparql) CONSTRUCT into a function.	Munyoki Kilyungi
2023-10-27	Delete gn3.db.rdf.sparql_query.	Munyoki Kilyungi
2023-10-27	Delete db.rdf.get_url_local_name.	Munyoki Kilyungi
2023-10-27	Implement "GET /metadata/phenotypes/:name".	Munyoki Kilyungi
2023-10-27	Delete get_dataset_metadata.	Munyoki Kilyungi
2023-10-27	Implement "GET /metadata/publications/:name".	Munyoki Kilyungi
2023-10-27	Add fabio: and prism: to PREFIXES.	Munyoki Kilyungi
2023-10-27	Implement "GET /metadata/datasets/:name".	Munyoki Kilyungi
2023-10-27	Add missing dcat: prefix.	Munyoki Kilyungi
2023-10-27	Derive RDF_PREFIXES string from PREFIXES.	Munyoki Kilyungi
2023-10-27	Remove get_url_local_name when processing result keys.	Munyoki Kilyungi
2023-10-27	Simplify CONSTRUCT query when fetching a dataset's metadata.	Munyoki Kilyungi
2023-10-27	Update RDF prefixes.	Munyoki Kilyungi
2023-10-06	Make argument mandatory	Frederick Muriuki Muriithi
2023-09-21	Fix query in update_cross_reference	zsloan
2023-09-05	Delete un-used import	Munyoki Kilyungi
2023-09-05	Fix C3001: Lambda expression assigned to a variable	Munyoki Kilyungi
2023-09-05	Remove un-necessary string concatenation	Munyoki Kilyungi
2023-09-05	Replace "escape_string" with safe-query parameters	Munyoki Kilyungi
2023-09-05	Remove type annotations for "none_case_attrs" variables	Munyoki Kilyungi
2023-08-24	Change get_pheno_csv_sample_data to use group ID instead of phenotype ID	zsloan
2023-08-17	Fix query for fetching DataId when inserting ProbeSet data	zsloan
2023-08-17	Fix a couple remaining issues with function parameters	zsloan
2023-08-17	Combine pheno/mrna update functions + some other fixes	zsloan
2023-08-17	Fix queries for fetching group names	zsloan
2023-08-17	Fix fetch_trait query for phenotypes	zsloan
2023-08-17	Fix a few misnamed tables in mrna delete/insert functions	zsloan
2023-08-17	Implement ProbeSet sample data editing	zsloan
2023-08-17	Fix probeset sample data and CSV sample data functions	zsloan
2023-08-17	Fix query for retrieving mrna dataset group name	zsloan
2023-08-17	Fix get_mrna_sample_data query	zsloan
2023-08-17	Fix mrna group name query	zsloan
2023-08-17	Remove Id select from probeset metadata query, since it's included in cols	zsloan
2023-08-17	Add function for retrieving mRNA Assay group name	zsloan
2023-08-17	Make several sample_data fetching functions specific to phenotype or mrna ass...	zsloan