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| author | Munyoki Kilyungi | 2023-10-19 11:33:36 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2023-10-27 13:45:32 +0300 |
| commit | 8be0865e940a0e642b6a1bfb4d266dd7b5c79d69 (patch) | |
| tree | 7ad22b077151cb7251d53f82e353ff45a1d45744 /gn3/db | |
| parent | f8e5a04d5e7c340657ae69fb95884f00d68ac7c1 (diff) | |
| download | genenetwork3-8be0865e940a0e642b6a1bfb4d266dd7b5c79d69.tar.gz | |
Delete get_dataset_metadata.
* gn3/db/rdf.py (get_dataset_metadata): Delete.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'gn3/db')
| -rw-r--r-- | gn3/db/rdf.py | 43 |
1 files changed, 0 insertions, 43 deletions
diff --git a/gn3/db/rdf.py b/gn3/db/rdf.py index 2f80aa2..ae0ec29 100644 --- a/gn3/db/rdf.py +++ b/gn3/db/rdf.py @@ -87,49 +87,6 @@ def get_url_local_name(string: str) -> str: return string -def get_dataset_metadata( - sparql_conn: SPARQLWrapper, name: str -) -> MonadicDict: - """Return info about dataset with a given NAME""" - response: MonadicDict = MonadicDict() - for key, value in sparql_query( - sparql_conn, - Template(""" -$prefix - -CONSTRUCT { - ?dataset ?predicate ?term . - ?dataset gnt:classifiedUnder ?inbredSetName . - ?dataset gnt:usesNormalization ?normalizationLabel . - ?typePredicate ex:DatasetType ?typeName . -} WHERE { - ?dataset rdf:type dcat:Dataset . - ?dataset ?predicate ?term . - ?dataset xkos:classifiedUnder ?inbredSet . - gnc:Set skos:member ?inbredSet . - ?dataset (rdfs:label|dct:identifier) "$name" . - ?inbredSet rdfs:label ?inbredSetName . - OPTIONAL { - ?dataset xkos:classifiedUnder ?type . - gnc:DatasetType skos:member ?type . - ?type ?typePredicate ?typeName . - ?type (skos:altLabel|skos:prefLabel) ?typeName . - } . - OPTIONAL { - ?dataset gnt:usesNormalization ?normalization . - ?normalization rdfs:label ?normalizationLabel . - } - FILTER (!regex(str(?predicate), '(classifiedUnder|usesNormalization)','i')) . -}""") - .substitute( - prefix=RDF_PREFIXES, - name=name - ) - )[0].items(): - response[key] = value - return response - - def get_phenotype_metadata( sparql_conn: SPARQLWrapper, name: str ): |