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authorzsloan2023-08-11 21:51:05 +0000
committerzsloan2023-08-17 14:54:42 -0500
commit1bd2c99ee973f92a324379ea1afc79d355917345 (patch)
tree487f1bd3ade7e2dede79e256ecace8caf078868b /gn3/db
parent83fa360126c371899c7d85acdc3883477782945b (diff)
downloadgenenetwork3-1bd2c99ee973f92a324379ea1afc79d355917345.tar.gz
Fix a few misnamed tables in mrna delete/insert functions
Diffstat (limited to 'gn3/db')
-rw-r--r--gn3/db/sample_data.py10
1 files changed, 5 insertions, 5 deletions
diff --git a/gn3/db/sample_data.py b/gn3/db/sample_data.py
index 8fdc618..57966f1 100644
--- a/gn3/db/sample_data.py
+++ b/gn3/db/sample_data.py
@@ -514,8 +514,8 @@ def delete_mrna_sample_data(
none_case_attrs: Dict[str, Any] = {
"Strain Name": lambda: 0,
- "Value": lambda: __delete_data(conn, "PublishData"),
- "SE": lambda: __delete_data(conn, "PublishSE"),
+ "Value": lambda: __delete_data(conn, "ProbeSetData"),
+ "SE": lambda: __delete_data(conn, "ProbeSetSE"),
"Count": lambda: __delete_data(conn, "NStrain"),
}
count = 0
@@ -668,8 +668,8 @@ def insert_mrna_sample_data(
none_case_attrs: Dict[str, Any] = {
"Strain Name": lambda _: 0,
- "Value": lambda x: __insert_data(conn, "PublishData", x),
- "SE": lambda x: __insert_data(conn, "PublishSE", x),
+ "Value": lambda x: __insert_data(conn, "ProbeSetData", x),
+ "SE": lambda x: __insert_data(conn, "ProbeSetSE", x),
"Count": lambda x: __insert_data(conn, "NStrain", x),
}
@@ -679,7 +679,7 @@ def insert_mrna_sample_data(
# Check if the data already exists:
with conn.cursor() as cursor:
cursor.execute(
- "SELECT Id FROM PublishData where Id = %s "
+ "SELECT Id FROM ProbeSetData where Id = %s "
"AND StrainId = %s",
(data_id, strain_id))
data_exists = cursor.fetchone()