aboutsummaryrefslogtreecommitdiff
path: root/gn3/db
diff options
context:
space:
mode:
authorzsloan2023-08-07 20:23:25 +0000
committerzsloan2023-08-17 14:54:42 -0500
commitd0d996f4d963de9e033b622a1e51385cb1be0886 (patch)
treef8f75f137154a21a6ae54ac13d4bd457ae2de42d /gn3/db
parent02fdf658e1118e5638663d3a8d87ba3a1e6ef913 (diff)
downloadgenenetwork3-d0d996f4d963de9e033b622a1e51385cb1be0886.tar.gz
Fix query for retrieving mrna dataset group name
Diffstat (limited to 'gn3/db')
-rw-r--r--gn3/db/datasets.py10
1 files changed, 5 insertions, 5 deletions
diff --git a/gn3/db/datasets.py b/gn3/db/datasets.py
index 38819db..0c0fab4 100644
--- a/gn3/db/datasets.py
+++ b/gn3/db/datasets.py
@@ -44,11 +44,11 @@ def retrieve_mrna_group_name(connection: Any, probeset_id: int):
of the group the dataset belongs to.
"""
query = (
- "SELECT is.Name "
- "FROM ProbeSet ps LEFT JOIN ProbeSetXRef psx ON px.ProbeSetId = ps.Id "
- "INNER JOIN ProbeSetFreeze psf ON psx.ProbeSetFreezeId = psf.Id "
- "INNER JOIN ProbeFreeze pf ON psf.ProbeFreezeId = ProbeFreeze.Id "
- "INNER JOIN InbredSet is ON pf.InbredSetId = is.Id "
+ "SELECT iset.Name "
+ "FROM ProbeSet ps LEFT JOIN ProbeSetXRef psx ON psx.ProbeSetId = ps.Id "
+ "LEFT JOIN ProbeSetFreeze psf ON psx.ProbeSetFreezeId = psf.Id "
+ "LEFT JOIN ProbeFreeze pf ON psf.ProbeFreezeId = pf.Id "
+ "LEFT JOIN InbredSet iset ON pf.InbredSetId = iset.Id "
"WHERE ps.Id = %(probeset_id)s")
with connection.cursor() as cursor:
cursor.execute(query, {"probeset_id": probeset_id})