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2024-02-14replace d3js libAlexander_Kabui
2024-02-14replace jquery-ui cdn with guix packagingAlexander_Kabui
2024-02-14replace cdn jquery.js with guix packageAlexander_Kabui
2024-02-14remove bootstrap js external linkAlexander_Kabui
2024-02-14replace bootstrap external linkAlexander_Kabui
2024-02-14replace datatable cdn links with guix packagesAlexander_Kabui
2024-02-14fetch xterm cdn from guixAlexander_Kabui
2024-02-14replace font awesome external linksAlexander_Kabui
2024-01-30Fix path in mechanical-rob testsFrederick Muriuki Muriithi
2024-01-30Use XPath to specify form, and refine testFrederick Muriuki Muriithi
Use XPath to pick the form by its ID rather than its numerical position which can change with the addition of (a) form(s) before the one we wish to test.
2024-01-30Error reporting: Pass external error forward to GN2's error handlingFrederick Muriuki Muriithi
2024-01-30Create framework for error handling and handle connection errorsFrederick Muriuki Muriithi
2024-01-25fix on UI wordingAlexander_Kabui
2024-01-25fix issue loading gnqa prev queries on base fileAlexander_Kabui
2024-01-25add view point for gnqa search historyAlexander_Kabui
2024-01-25Add modal for search historyAlexander_Kabui
2024-01-19Add list panel implementationAlexander_Kabui
2024-01-18fix for qnqa ui letter spacingAlexander_Kabui
2024-01-16fix typo errorAlexander_Kabui
2024-01-16Merge pull request #828 from genenetwork/feature/reference-rating-uiAlexander Kabui
add UI for reference rating gn-llm documents
2024-01-16add UI for reference rating gn-llm documentsAlexander_Kabui
2024-01-12Correctly patch the db connection when fetching accession_id.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com>
2024-01-12Switch NCBI link from http to https in failing test and RDF query.Munyoki Kilyungi
* gn2/tests/wqflask/show_trait/test_show_trait.py (test_get_ncbi_summary_request): Replace "http://eutils.ncbi.nlm.nih.gov" with "https://eutils.ncbi.nlm.nih.gov" * gn2/wqflask/views.py (get_probeset): Ditto. Co-authored-by: Alexander Kabui <Alexanderkabua@gmail.com> Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-01-12doc/testing.org: Fix minor typo.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-01-10Check whether the metadata.dataset group first exists.Munyoki Kilyungi
* gn2/wqflask/templates/genotype.html: Add metadata.dataset check in and clause. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-01-10Add a compare button that shows the current genotype page.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-01-10Add dataset metadata to genotype page when a dataset is specified.Munyoki Kilyungi
* gn2/wqflask/templates/genotype.html: Add extra dataset metadata. * gn2/wqflask/views.py (get_genotype): Extend genotype URL to enable specifying the dataset name. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-01-09Fix the way accession_id is set + update info link on correlation pagezsloan
2024-01-09Update script's module path.Frederick Muriuki Muriithi
2024-01-09Update module pathsFrederick Muriuki Muriithi
With the reorganisation, a number of module paths changed, and need to be updated. This commit fixes a few obvious ones.
2024-01-08Update default permutations for R/qtl to 0zsloan
2024-01-08Update ncbi summary link to https, since before it was spending extra time ↵zsloan
trying (and failing) to query the http link before trying https
2024-01-08Update DB info link on search result page and trait pagezsloan
2024-01-08Fix issue where mapmodel_rqtl and mapmethod_rqtl were still named ↵zsloan
mapmodel_rqtl_geno and mapmethod_rqtl_geno respectively
2024-01-08Add a compare button that shows the current probeset page.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-01-08Include Entrez summary for a geneID on the ProbeSet page.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-01-08Add dataset metadata to probeset page when a dataset is specified.Munyoki Kilyungi
* gn2/wqflask/templates/probeset.html: Add extra dataset metadata elements for groups, species, tissue name and dataset link. * gn2/wqflask/views.py (get_probeset): Extend probeset URL to enable specifying the dataset name. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-01-08add GNQA descriptionAlexander_Kabui
2024-01-08code refactoring for gn llm uiAlexander_Kabui
2024-01-08add css file for gn-llm-uiAlexander_Kabui
2024-01-08revert to use GN3_LOCAL_URL for gn3 api endpointAlexander_Kabui
2024-01-08fix url errorAlexander_Kabui
2024-01-08fix url errorAlexander_Kabui
2024-01-08merge testingAlexander_Kabui
2024-01-08revert commit gn server urlAlexander_Kabui
2024-01-06Add probeset RDF page.Munyoki Kilyungi
* gn2/wqflask/templates/probeset.html: New probeset HTML file. * gn2/wqflask/views.py (get_probeset): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-01-05fix errorAlexander_Kabui
2024-01-05fetch gn_server_url from current configAlexander_Kabui
2024-01-02Fix path to error GIFs.Arun Isaac
genenetwork2 is now run from the top-level directory of the repo. So, we prepend gn2 to the error GIF path. * gn2/wqflask/views.py (handle_generic_exceptions): Prepend gn2 to error GIF path.
2024-01-02Make Group Info button point to info.genenetwork.orgzsloan