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| author | Munyoki Kilyungi | 2024-01-12 16:28:59 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2024-01-12 17:03:14 +0300 |
| commit | 2418e965209c911dbd6f518c93cbe7d9b602ff1b (patch) | |
| tree | 9fbb787805151ecade835536cdf391838a5a0864 | |
| parent | e88c170135284732a0d0ce231caa3811eafab6c6 (diff) | |
| download | genenetwork2-2418e965209c911dbd6f518c93cbe7d9b602ff1b.tar.gz | |
Switch NCBI link from http to https in failing test and RDF query.
* gn2/tests/wqflask/show_trait/test_show_trait.py
(test_get_ncbi_summary_request): Replace
"http://eutils.ncbi.nlm.nih.gov" with
"https://eutils.ncbi.nlm.nih.gov"
* gn2/wqflask/views.py (get_probeset): Ditto.
Co-authored-by: Alexander Kabui <Alexanderkabua@gmail.com>
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| -rw-r--r-- | gn2/tests/wqflask/show_trait/test_show_trait.py | 2 | ||||
| -rw-r--r-- | gn2/wqflask/views.py | 2 |
2 files changed, 2 insertions, 2 deletions
diff --git a/gn2/tests/wqflask/show_trait/test_show_trait.py b/gn2/tests/wqflask/show_trait/test_show_trait.py index 51b0c82c..e4d2f597 100644 --- a/gn2/tests/wqflask/show_trait/test_show_trait.py +++ b/gn2/tests/wqflask/show_trait/test_show_trait.py @@ -53,7 +53,7 @@ def test_get_ncbi_summary_request(mocker): """})) assert get_ncbi_summary(trait) == "this is a summary of the geneid" mock_get.assert_called_once_with( - "http://eutils.ncbi.nlm.nih.gov/entrez/" + "https://eutils.ncbi.nlm.nih.gov/entrez/" "eutils/esummary.fcgi?db=gene&id=" f"{trait.geneid}&retmode=json" ) diff --git a/gn2/wqflask/views.py b/gn2/wqflask/views.py index 3fbda913..b3bdde75 100644 --- a/gn2/wqflask/views.py +++ b/gn2/wqflask/views.py @@ -1195,7 +1195,7 @@ def get_probeset(name, dataset=None): gene_id = gene_id.get("id").split("=")[-1] result = json.loads( requests.get( - f"http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=gene&id={gene_id}&retmode=json" + f"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=gene&id={gene_id}&retmode=json" ).content )['result'] summary = result[gene_id]['summary'] |