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authorMunyoki Kilyungi2024-01-12 16:28:59 +0300
committerBonfaceKilz2024-01-12 17:03:14 +0300
commit2418e965209c911dbd6f518c93cbe7d9b602ff1b (patch)
tree9fbb787805151ecade835536cdf391838a5a0864
parente88c170135284732a0d0ce231caa3811eafab6c6 (diff)
downloadgenenetwork2-2418e965209c911dbd6f518c93cbe7d9b602ff1b.tar.gz
Switch NCBI link from http to https in failing test and RDF query.
* gn2/tests/wqflask/show_trait/test_show_trait.py
(test_get_ncbi_summary_request): Replace
"http://eutils.ncbi.nlm.nih.gov" with
"https://eutils.ncbi.nlm.nih.gov"
* gn2/wqflask/views.py (get_probeset): Ditto.

Co-authored-by: Alexander Kabui <Alexanderkabua@gmail.com>
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
-rw-r--r--gn2/tests/wqflask/show_trait/test_show_trait.py2
-rw-r--r--gn2/wqflask/views.py2
2 files changed, 2 insertions, 2 deletions
diff --git a/gn2/tests/wqflask/show_trait/test_show_trait.py b/gn2/tests/wqflask/show_trait/test_show_trait.py
index 51b0c82c..e4d2f597 100644
--- a/gn2/tests/wqflask/show_trait/test_show_trait.py
+++ b/gn2/tests/wqflask/show_trait/test_show_trait.py
@@ -53,7 +53,7 @@ def test_get_ncbi_summary_request(mocker):
         """}))
     assert get_ncbi_summary(trait) == "this is a summary of the geneid"
     mock_get.assert_called_once_with(
-        "http://eutils.ncbi.nlm.nih.gov/entrez/"
+        "https://eutils.ncbi.nlm.nih.gov/entrez/"
         "eutils/esummary.fcgi?db=gene&id="
         f"{trait.geneid}&retmode=json"
     )
diff --git a/gn2/wqflask/views.py b/gn2/wqflask/views.py
index 3fbda913..b3bdde75 100644
--- a/gn2/wqflask/views.py
+++ b/gn2/wqflask/views.py
@@ -1195,7 +1195,7 @@ def get_probeset(name, dataset=None):
         gene_id = gene_id.get("id").split("=")[-1]
         result = json.loads(
             requests.get(
-                f"http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=gene&id={gene_id}&retmode=json"
+                f"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=gene&id={gene_id}&retmode=json"
             ).content
         )['result']
         summary = result[gene_id]['summary']