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| author | Munyoki Kilyungi | 2024-01-08 18:23:19 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2024-01-08 19:23:48 +0300 |
| commit | 900457449376dd6217d414390f52c2b4838696b0 (patch) | |
| tree | e3a7cc5c0db42cb256fc7156695d3bc26df7e9e7 | |
| parent | a3442a76ff16a1d96999aa3158f548a0fe8843f6 (diff) | |
| download | genenetwork2-900457449376dd6217d414390f52c2b4838696b0.tar.gz | |
Add dataset metadata to probeset page when a dataset is specified.
* gn2/wqflask/templates/probeset.html: Add extra dataset metadata elements for groups, species, tissue name and dataset link. * gn2/wqflask/views.py (get_probeset): Extend probeset URL to enable specifying the dataset name. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| -rw-r--r-- | gn2/wqflask/templates/probeset.html | 26 | ||||
| -rw-r--r-- | gn2/wqflask/views.py | 4 |
2 files changed, 19 insertions, 11 deletions
diff --git a/gn2/wqflask/templates/probeset.html b/gn2/wqflask/templates/probeset.html index 53d7136e..ed96e6c3 100644 --- a/gn2/wqflask/templates/probeset.html +++ b/gn2/wqflask/templates/probeset.html @@ -26,23 +26,22 @@ mRNA Expression: <h3>{{ metadata.description }}</h3> {% endif %} <table class="table"> - {% if metadata.dataset %} + {% if metadata.group and metadata.species %} <tr> <td><b>Group </b></td> <td> - <a href="{{ metadata.group }}" target="_blank">{{ metadata.dataset }}</a> + {{ metadata.species|capitalize }}: {{ metadata.group }} </td> </tr> + {% endif %} + + {% if metadata.tissue %} <tr> - <td><b>Dataset </b></td> - <td> - <a href="{{ metadata.group }}" target="_blank">{{ metadata.datasetName }}</a> + <td><b>Tissue</b></td> + <td> + {{ metadata.tissue }} </td> - </tr> - <tr> - <td><b>Tissue</b></td> - <td>{{ metadata.tissue}}</td> - </tr> + </tr> {% endif %} {% if metadata.symbol %} @@ -82,6 +81,13 @@ mRNA Expression: </tr> {% endif %} + {% if metadata.dataset and dataset %} + <tr> + <td><b>Database</b></td> + <td><a href={{ url_for('get_dataset', name=dataset) }} target="_blank">{{ metadata.dataset }}</a></td> + </tr> + {% endif %} + {% if metadata.specificity or metadata.blatScore %} <tr> <td><b>Target Score</b></td> diff --git a/gn2/wqflask/views.py b/gn2/wqflask/views.py index 837677dd..cbf530c6 100644 --- a/gn2/wqflask/views.py +++ b/gn2/wqflask/views.py @@ -1183,7 +1183,8 @@ def get_phenotype(name, group=None): @app.route("/probesets/<name>", methods=('GET',)) -def get_probeset(name): +@app.route("/probesets/<dataset>/<name>", methods=["GET"]) +def get_probeset(name, dataset=None): metadata = requests.get( urljoin( GN3_LOCAL_URL, @@ -1192,6 +1193,7 @@ def get_probeset(name): return render_template( "probeset.html", name=name, + dataset=dataset, metadata=metadata, ) |