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| author | Frederick Muriuki Muriithi | 2024-01-09 16:37:12 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-01-09 16:37:12 +0300 |
| commit | a99d72418d2349ba782fa4e48e68c46426641a01 (patch) | |
| tree | 722bfaa980586a97e86b5883884c84169d7d15d5 | |
| parent | edd9b58b8dd2f3422548d11cea5a4d48176318a9 (diff) | |
| download | genenetwork2-a99d72418d2349ba782fa4e48e68c46426641a01.tar.gz | |
Update module paths
With the reorganisation, a number of module paths changed, and need to
be updated. This commit fixes a few obvious ones.
| -rwxr-xr-x | bin/genenetwork2 | 2 | ||||
| -rw-r--r-- | gn2/jobs/jobs.py | 2 | ||||
| -rw-r--r-- | gn2/runserver.py | 2 |
3 files changed, 3 insertions, 3 deletions
diff --git a/bin/genenetwork2 b/bin/genenetwork2 index 3e2f31d3..01026811 100755 --- a/bin/genenetwork2 +++ b/bin/genenetwork2 @@ -223,4 +223,4 @@ fi # Start the flask server running GN2 echo "Starting with $settings" -python gn2.runserver.py +python -m gn2.runserver diff --git a/gn2/jobs/jobs.py b/gn2/jobs/jobs.py index f796fa9a..dfcdf274 100644 --- a/gn2/jobs/jobs.py +++ b/gn2/jobs/jobs.py @@ -58,7 +58,7 @@ def queue(redis_conn: Redis, job: dict) -> UUID: def run(job_id: UUID, redis_uri: str): command = [ - sys.executable, "-m", "scripts.run_external", + sys.executable, "-m", "gn2.scripts.run_external", f"--redis-uri={redis_uri}", "run-job", str(job_id)] print(f"COMMAND: {shlex.join(command)}") subprocess.Popen(command) diff --git a/gn2/runserver.py b/gn2/runserver.py index 45a51385..0c95f715 100644 --- a/gn2/runserver.py +++ b/gn2/runserver.py @@ -7,7 +7,7 @@ # # /sbin/iptables -A INPUT -p tcp -i eth0 -s ! 71.236.239.43 --dport 5003 -j DROP -from gn2_main import app +from gn2.gn2_main import app from gn2.utility.startup_config import app_config from gn2.utility.tools import WEBSERVER_MODE, SERVER_PORT |