diff options
| author | Munyoki Kilyungi | 2024-01-08 18:40:01 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2024-01-08 19:23:48 +0300 |
| commit | ec3c483b7feef3e36ce467ec35efd57f316031b0 (patch) | |
| tree | 671b6c3995dbe5571cd061b81917af951f309069 | |
| parent | 900457449376dd6217d414390f52c2b4838696b0 (diff) | |
| download | genenetwork2-ec3c483b7feef3e36ce467ec35efd57f316031b0.tar.gz | |
Include Entrez summary for a geneID on the ProbeSet page.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| -rw-r--r-- | gn2/wqflask/templates/probeset.html | 7 | ||||
| -rw-r--r-- | gn2/wqflask/views.py | 10 |
2 files changed, 17 insertions, 0 deletions
diff --git a/gn2/wqflask/templates/probeset.html b/gn2/wqflask/templates/probeset.html index ed96e6c3..327870c8 100644 --- a/gn2/wqflask/templates/probeset.html +++ b/gn2/wqflask/templates/probeset.html @@ -72,6 +72,13 @@ mRNA Expression: </tr> {% endif %} + {% if summary %} + <tr> + <td><b>Summary</b></td> + <td>{{ summary }}</td> + </tr> + {% endif %} + {% if metadata.blatSeq %} <tr> <td><b>BLAT Sequence</b></td> diff --git a/gn2/wqflask/views.py b/gn2/wqflask/views.py index cbf530c6..ec138a67 100644 --- a/gn2/wqflask/views.py +++ b/gn2/wqflask/views.py @@ -1190,11 +1190,21 @@ def get_probeset(name, dataset=None): GN3_LOCAL_URL, f"/api/metadata/probesets/{name}") ).json() + summary = None + if gene_id := metadata.get("geneID"): + gene_id = gene_id.get("id").split("=")[-1] + result = json.loads( + requests.get( + f"http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=gene&id={gene_id}&retmode=json" + ).content + )['result'] + summary = result[gene_id]['summary'] return render_template( "probeset.html", name=name, dataset=dataset, metadata=metadata, + summary=summary, ) |