| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-01-16 | fix typo error | Alexander_Kabui | |
| 2024-01-16 | Merge pull request #828 from genenetwork/feature/reference-rating-ui | Alexander Kabui | |
| add UI for reference rating gn-llm documents | |||
| 2024-01-16 | add UI for reference rating gn-llm documents | Alexander_Kabui | |
| 2024-01-12 | Correctly patch the db connection when fetching accession_id. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> | |||
| 2024-01-12 | Switch NCBI link from http to https in failing test and RDF query. | Munyoki Kilyungi | |
| * gn2/tests/wqflask/show_trait/test_show_trait.py (test_get_ncbi_summary_request): Replace "http://eutils.ncbi.nlm.nih.gov" with "https://eutils.ncbi.nlm.nih.gov" * gn2/wqflask/views.py (get_probeset): Ditto. Co-authored-by: Alexander Kabui <Alexanderkabua@gmail.com> Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-01-12 | doc/testing.org: Fix minor typo. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-01-10 | Check whether the metadata.dataset group first exists. | Munyoki Kilyungi | |
| * gn2/wqflask/templates/genotype.html: Add metadata.dataset check in and clause. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-01-10 | Add a compare button that shows the current genotype page. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-01-10 | Add dataset metadata to genotype page when a dataset is specified. | Munyoki Kilyungi | |
| * gn2/wqflask/templates/genotype.html: Add extra dataset metadata. * gn2/wqflask/views.py (get_genotype): Extend genotype URL to enable specifying the dataset name. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-01-09 | Fix the way accession_id is set + update info link on correlation page | zsloan | |
| 2024-01-09 | Update script's module path. | Frederick Muriuki Muriithi | |
| 2024-01-09 | Update module paths | Frederick Muriuki Muriithi | |
| With the reorganisation, a number of module paths changed, and need to be updated. This commit fixes a few obvious ones. | |||
| 2024-01-08 | Update default permutations for R/qtl to 0 | zsloan | |
| 2024-01-08 | Update ncbi summary link to https, since before it was spending extra time ↵ | zsloan | |
| trying (and failing) to query the http link before trying https | |||
| 2024-01-08 | Update DB info link on search result page and trait page | zsloan | |
| 2024-01-08 | Fix issue where mapmodel_rqtl and mapmethod_rqtl were still named ↵ | zsloan | |
| mapmodel_rqtl_geno and mapmethod_rqtl_geno respectively | |||
| 2024-01-08 | Add a compare button that shows the current probeset page. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-01-08 | Include Entrez summary for a geneID on the ProbeSet page. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-01-08 | Add dataset metadata to probeset page when a dataset is specified. | Munyoki Kilyungi | |
| * gn2/wqflask/templates/probeset.html: Add extra dataset metadata elements for groups, species, tissue name and dataset link. * gn2/wqflask/views.py (get_probeset): Extend probeset URL to enable specifying the dataset name. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-01-08 | add GNQA description | Alexander_Kabui | |
| 2024-01-08 | code refactoring for gn llm ui | Alexander_Kabui | |
| 2024-01-08 | add css file for gn-llm-ui | Alexander_Kabui | |
| 2024-01-08 | revert to use GN3_LOCAL_URL for gn3 api endpoint | Alexander_Kabui | |
| 2024-01-08 | fix url error | Alexander_Kabui | |
| 2024-01-08 | fix url error | Alexander_Kabui | |
| 2024-01-08 | merge testing | Alexander_Kabui | |
| 2024-01-08 | revert commit gn server url | Alexander_Kabui | |
| 2024-01-06 | Add probeset RDF page. | Munyoki Kilyungi | |
| * gn2/wqflask/templates/probeset.html: New probeset HTML file. * gn2/wqflask/views.py (get_probeset): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-01-05 | fix error | Alexander_Kabui | |
| 2024-01-05 | fetch gn_server_url from current config | Alexander_Kabui | |
| 2024-01-02 | Fix path to error GIFs. | Arun Isaac | |
| genenetwork2 is now run from the top-level directory of the repo. So, we prepend gn2 to the error GIF path. * gn2/wqflask/views.py (handle_generic_exceptions): Prepend gn2 to error GIF path. | |||
| 2024-01-02 | Make Group Info button point to info.genenetwork.org | zsloan | |
| 2024-01-02 | Change the way the info button works so that it just submits a form instead ↵ | zsloan | |
| of opening a window with JS | |||
| 2024-01-02 | Install static directory recursively. | Arun Isaac | |
| 2024-01-02 | Fix base directory name in manifest. | Arun Isaac | |
| Earlier, we renamed the base directory from wqflask to gn2. Do likewise in the manifest. | |||
| 2024-01-02 | Move default settings into gn2 module. | Arun Isaac | |
| 2024-01-02 | Do not read version from separate file. | Arun Isaac | |
| There is not much use having a separate version file. Besides, not having a separate file saves us all the trouble of dealing with the path to that file. | |||
| 2024-01-02 | Consistently use GN_VERSION from app config. | Arun Isaac | |
| GN_VERSION is set in the configuration file and read into the app config dictionary. Use that instead of re-reading from the etc/VERSION file. * gn2/utility/tools.py (gn_version): Delete function. (GN_VERSION): Delete variable. * gn2/wqflask/metadata_edits.py (display_phenotype_metadata, display_probeset_metadata, show_history): Use GN_VERSION in app config. * gn2/wqflask/views.py: Do not import GN_VERSION from gn2.utility.tools. (handle_generic_exceptions, index_page.__render__, submit_trait_form): Use GN_VERSION in app config. | |||
| 2024-01-02 | merge changes | Alexander_Kabui | |
| 2024-01-02 | add loading spinner for form submission | Alexander_Kabui | |
| 2024-01-02 | fix issue for chromium browsers:form submitting twice | Alexander_Kabui | |
| 2023-12-30 | setup.py: Use find_packages. | Arun Isaac | |
| 2023-12-30 | Namespace mock paths under gn2. | Arun Isaac | |
| 2023-12-29 | Correct path to etc/VERSION. | Arun Isaac | |
| 2023-12-29 | Remove only up to -c in bin/genenetwork2. | Arun Isaac | |
| For example, in bin/genenetwork2 etc/default_settings.py -c -m pytest, remove only up to -c. | |||
| 2023-12-29 | Namespace all modules under gn2. | Arun Isaac | |
| We move all modules under a gn2 directory. This is important for "correct" packaging and deployment as a Guix service. | |||
| 2023-12-29 | use gn-serverl-url for gn3 api | Alexander_Kabui | |
| 2023-12-23 | use gn3 local url | Alexander_Kabui | |
| 2023-12-22 | Merge pull request #823 from genenetwork/feature/gn-llm-ui | Alexander Kabui | |
| Feature/gn llm UI | |||
| 2023-12-22 | guix: Do not fix version of package. | Arun Isaac | |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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