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Diffstat (limited to 'templates/index.html')
| -rw-r--r-- | templates/index.html | 33 |
1 files changed, 20 insertions, 13 deletions
diff --git a/templates/index.html b/templates/index.html index 0152184..dc235c5 100644 --- a/templates/index.html +++ b/templates/index.html @@ -6,22 +6,22 @@ </h3> <table> <tr><td > - <p> RatsPub searches PubMed to find <i>sentences</i> that contain the query terms (i.e., gene symbols) and <a href="https://github.com/chen42/RatsPub/blob/master/ratspub_keywords.py">drug addiction-related keywords</a>. These gene-keyword relationships are presented as an interactive graph that can efficiently answer the question <b>"What do we know about these genes and addiction?". </b> Data from <a href="https://www.ebi.ac.uk/gwas/">EBI GWAS catalog </a>are also included in the search. The graph has many interactive elements. For example, clicking gene names will launch a new search for sentences containing the target gene and 200 addiction-related genes. A tabular view is also available. </b> - <p>Up to 100 gene symbols can be entered in the box below. Gene symbols can be separated by either a space or a semicolon. Aliases will <i>not</i> be automatically included because the large number of false matches associated with gene synonyms retrieved from databases. + <p> RatsPub is a tool to efficiently and comprehensively answer the question <b>"What do we know about these genes and addiction?". </b> + + <p>RatsPub answers this question by searching PubMed to find <i>sentences</i> containing the query terms (i.e., gene symbols) and <a href="https://github.com/chen42/RatsPub/blob/master/ratspub_keywords.py">over 300 drug addiction-related keywords</a> that are organized into six categories. Data from <a href="https://www.ebi.ac.uk/gwas/">NHGRI-EBI GWAS catalog </a>are also included in the search. These gene-keyword relationships are presented as an interactive graph and a table. + <p>Gene alias often include non-specific words and are thus not included in the initial search. However, a list of alias can be found by clicking on the gene symbol in the results section. These alias then can be searched with a single click. + <p> +You can create an account if you need to save your results. Up to 30 gene symbols can be entered in the box below. Gene symbols can be separated by either a space or a semicolon. +<br> <b> Example: </b><a href=http://rats.pub/progress?type=GWAS&type=addiction&type=drug&type=brain&type=stress&type=psychiatric&type=function&query=Rgma+Nrxn3+Chrna3>Rgma Nrxn3 Chrna3</a>. + + <p> <b> {%if "name" in session %} - {{session['name']}}, your previous searches are <a href="/userarchive">archived </a> for faster retrival.</a> + {{session['name']}}, your previous searches are available in the <a href="/userarchive"> archive </a>.</a> {% else %} - Please sign in to save your searches. {% endif %} </b> - </td> - <td > - <div class='img'><img src="/static/ratspub.png" class="img-fluid"> - </td> - </tr> -</table> + <a> - <b> Example: </b><a href=http://rats.pub/progress?type=GWAS&type=addiction&type=drug&type=brain&type=stress&type=psychiatric&type=function&query=Rgma+Nrxn3+Chrna3>Rgma Nrxn3 Chrna3</a><p> <form action="/progress"> <div class="form-group row"> <div class="col-sm-10"> @@ -36,11 +36,18 @@ <input type="checkbox" name="type" value="function" checked> Function </label> </div> - <textarea name="query" class="form-control form-control-lg" type="search" row="3" id="searchform"> - </textarea> + <textarea name="query" class="form-control form-control-lg" type="search" row="3" id="searchform"></textarea> <button type="submit" class="btn btn-primary">Search</button> </div> </form> + + + </td> + <td > + <div class='img'><img src="/static/ratspub.png" class="img-fluid"> + </td> + </tr> +</table> {% endblock %} |