| Age | Commit message (Expand) | Author |
|---|
| 2023-03-22 | bh20-seq-resource: Update to 1.0-4.2ae7191....* gn/packages/bioinformatics.scm (bh20-seq-resource): Update to
1.0-4.2ae7191.
[source]: Adjust snippet for changes in source.
[arguments]: Skip tests.
[propagated-inputs]: Add python-shexc-0.7. Remove python-dateutil,
python-flask, python-pycurl, python38-ruaml.yaml-0.15.76, clustalw,
python-twint.
[native-inputs]: Remove git, python-oauth2client, python-uritemplate.
Replace python-pytest-4 with python-pytest-5, python-pytest-runner-2
with python-pytest-runner-4.
| Efraim Flashner |
| 2023-03-22 | Add python-pytest-runner-4....* gn/packages/python.scm (python-pytest-runner-4): New variable.
* gn/packages/bioinformatics.scm (python-pytest-runner-2): MOve to
python.scm
| Efraim Flashner |
| 2022-12-08 | Minor fixes aiming for genenetwork1 | Pjotr Prins |
| 2022-11-30 | gn: Remove upstreamed packages | Efraim Flashner |
| 2022-11-16 | gn: Add graph-genotyper and dependent packages | Efraim Flashner |
| 2022-11-13 | gn: pgr-tk: Unbundle agc. | Efraim Flashner |
| 2022-11-10 | gn: Add missing imports and package licenses. | Efraim Flashner |
| 2022-11-10 | gn: Add pgr-tk | Efraim Flashner |
| 2022-09-24 | gn: Update blobtools. | Efraim Flashner |
| 2022-09-20 | gn: Add blobtools. | Efraim Flashner |
| 2022-08-18 | gn: bioinformatics: Add import of moved python-setuptools-scm... * gn/packages/bioinformatics.scm
| Pjotr Prins |
| 2022-07-29 | gn: busco: Update to 5.4.1. | Efraim Flashner |
| 2022-07-29 | gnu: pplacer: Fix building....* gn/packages/ocaml.scm (ocaml4.07-lwt-5.5.0): New variable.
(build-with-ocaml4.07): New procedure.
* gn/packages/bioinformatics.scm (pplacer): Wrap with
build-with-ocaml4.07.
| Efraim Flashner |
| 2022-06-21 | gn: Add quast. | Efraim Flashner |
| 2022-06-21 | gn: metaeuk: Fix building package. | Efraim Flashner |
| 2022-06-07 | gn: hap.py: Add previously missing inputs. | Efraim Flashner |
| 2022-06-07 | gn: Fix building python2-bx-python. | Efraim Flashner |
| 2022-06-07 | gn: pplacer-scripts: Update argument field. | Efraim Flashner |
| 2022-06-07 | gn: python2-biopython: Fix building package. | Efraim Flashner |
| 2022-06-07 | gn: Hide inputs which have been dropped by Guix. | Efraim Flashner |
| 2022-06-07 | gn: Add missing module imports | Efraim Flashner |
| 2022-06-01 | gn: Add python2-biopython....python2-biopython has been removed from Guix upstream.
* gn/packages/bioinformatics.scm (python2-biopython): New variable.
| Arun Isaac |
| 2022-06-01 | gn: bioinformatics: Import (gnu packages ocaml)....* gn/packages/bioinformatics.scm: Import (gnu packages ocaml) required
by dependencies of pplacer.
| Arun Isaac |
| 2022-06-01 | gnu: Add pplacer....pplacer and pplacer-scripts have been removed from Guix upstream.
* gn/packages/bioinformatics.scm (pplacer, pplacer-scripts): New
variables.
| Arun Isaac |
| 2022-06-01 | gnu: Add python-pytest-runner-2....python-pytest-runner-2 has been removed from Guix upstream.
* gn/packages/bioinformatics.scm (python-pytest-runner-2): New
variable.
| Arun Isaac |
| 2022-06-01 | gn: Adjust vg for other architectures | Efraim Flashner |
| 2022-04-20 | gn: Add wfa2-lib-static. | Efraim Flashner |
| 2022-04-20 | gn: wfa2-lib: Install headers. | Efraim Flashner |
| 2022-04-19 | gn: Add wfa2-lib. | Efraim Flashner |
| 2022-04-10 | gn: vg: Update to 1.39.0. | Efraim Flashner |
| 2022-03-31 | gn: Update gfaffix to 0.1.3 | Efraim Flashner |
| 2022-03-20 | gn: upstream python-scikit-allel | Efraim Flashner |
| 2022-03-16 | gn: Add python-pixy. | Efraim Flashner |
| 2022-02-27 | gn: Add willowmap | Efraim Flashner |
| 2022-01-23 | gn: Add verkko. | Efraim Flashner |
| 2022-01-23 | gn: graphaligner: Fix building and update to 1.0.14 | Efraim Flashner |
| 2022-01-09 | gn: Unconditionally use current rust package. | Efraim Flashner |
| 2021-12-29 | gnu: Add python2-bx-python....python2-bx-python has been removed from upstream Guix.
* gn/packages/bioinformatics.scm (python2-bx-python): New variable.
| Arun Isaac |
| 2021-12-29 | Reference non-public rust packages using @@....rust-1.47 and rust-1.49 are no longer exported from (gnu packages
rust).
* gn/packages/bioinformatics.scm (gfaffix): Reference rust-1.49 using
@@.
* gn/packages/crates-io.scm (rust-handlegraph-0.7): Reference
rust-1.47 using @@.
| Arun Isaac |
| 2021-12-06 | gn: Add mutation-simulator | Efraim Flashner |
| 2021-11-16 | gn: metaeuk: enable tests. | Efraim Flashner |
| 2021-11-15 | gn: Add sepp, busco | Efraim Flashner |
| 2021-11-14 | gn: Add augustus | Efraim Flashner |
| 2021-11-14 | gn: add metaeuk | Efraim Flashner |
| 2021-11-14 | gn: bh2-seq-resource: Update source uri, homepage | Efraim Flashner |
| 2021-10-12 | gn: Update gfaffix to 0.1.2.2. | Efraim Flashner |
| 2021-09-29 | gn: Add minia. | Efraim Flashner |
| 2021-09-03 | update pangenie | Erik Garrison |
| 2021-08-19 | gn: make sure we use the correct rust version | Efraim Flashner |
| 2021-08-11 | gn: Add pirs. | Efraim Flashner |
