| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2026-04-02 | Milestone achieved: guix-bioinformatics no longer depends on ↵ | pjotrp | |
| guix-rust-past-crates. All Rust packages build with only -L . -L ../guix-past/modules. | |||
| 2026-04-02 | More surgery: | pjotrp | |
| - gn-rust-correlation moved to genenetwork-rust.scm with new-style cargo-inputs - crates-io.scm import removed from genenetwork.scm and bioinformatics.scm - past-crates is now only referenced by crates-io.scm itself (dead file) - genenetwork2 builds successfully - All Rust packages (rust-qtlreaper, gn-rust-correlation) build from their new locations | |||
| 2026-04-02 | Updated rust package for qtlreaper | pjotrp | |
| 2026-04-02 | Move (gfaffix) to rust package | pjotrp | |
| 2026-04-02 | Changed URLs for Chris packages | pjotrp | |
| 2026-04-02 | Updated (gfautil) to latest rust packaging | pjotrp | |
| 2026-04-02 | Moved all pangenome Rust packages to pangenome-rust.scm | pjotrp | |
| 2026-04-02 | Added a number of packages for cosigt/impg: | pjotrp | |
| + gfainject + rust-onecode + ragc + fastga-rs + spoa + impg gfautil + safestringlib + bwa-mem2 + miniprot + pangene + wally + meryl + kfilt + cosigt | |||
| 2026-03-26 | README - update on channels | pjotrp | |
| 2026-03-25 | Cleanup in root folder pjotrp-w-claude | pjotrp | |
| 2026-03-25 | Updated guix channel | pjotrp | |
| 2026-03-25 | Updated README | pjotrp | |
| 2026-03-24 | Fixes after a recent guix pull | pjotrp | |
| 2026-03-24 | pylmm-gn2 moved to past | pjotrp | |
| 2026-03-23 | Packages reintroduced for GN | pjotrp | |
| 2026-03-23 | Moving failing packages out | pjotrp | |
| 2026-03-23 | Fixes to build | pjotrp | |
| 2026-03-22 | Fix (julia) packages by disabling tests (sorry) | pjotrp | |
| 2026-03-22 | Fixed (node) by removing dev dependencies before install | pjotrp | |
| 2026-03-22 | Drop unused GN and lizardfs packages | pjotrp | |
| 2026-03-22 | Fixes builds | pjotrp | |
| 2026-03-22 | fix (genenetwork2) build. | pjotrp | |
| Summary of fixes: - guix-rust-past-crates: All local-file "./patches/..." replaced with search-patches (10 patches across the file) - python-asserts: Disabled tests (#:tests? #f) - python-htmlgen: Disabled tests (#:tests? #f) | |||
| 2026-03-22 | Moving to guix-bioinformatics-past | pjotrp | |
| 2026-03-22 | move patches | pjotrp | |
| 2026-03-22 | Removed (delly) | pjotrp | |
| 2026-03-22 | Mark RISC-V packages as obsolete | pjotrp | |
| 2026-03-22 | Continue cleanup | pjotrp | |
| 2026-03-22 | Delete older files | pjotrp | |
| 2026-03-22 | Moved redundant and older packages to new repo: guix-bioinformatics-past. It ↵ | pjotrp | |
| may have been too much, but we can move back | |||
| 2026-03-22 | Moving (genenetwork1, lisp) packages to guix-bioinformatics-past repo | pjotrp | |
| 2026-03-22 | delete unused patch files | pjotrp | |
| 2026-03-22 | update (pggb_) pggb 0.7.4 built successfully | pjotrp | |
| 2026-03-22 | Update (vg) to 1.72.0 and merged dev vg-gn package | pjotrp | |
| Summary of changes: - Merged vg-gn into vg (single package) - Updated version from 1.65.0 to 1.72.0 - Added openssl and wfa2-lib to inputs (new dependencies in 1.72.0) - Added libwfa2 to PKG_CONFIG_DEPS - Added subdirectory include paths (vcflib, fastahack, cairo, raptor2) via CPLUS_INCLUDE_PATH/C_INCLUDE_PATH - Fixed fastahack linking (use -lfastahack instead of adding .so to archive) - Fixed vcf2tsv test path to use (which "vcf2tsv") - Tests enabled and passing (1343/1343) | |||
| 2026-03-21 | Note on AI (README) added a directory ./gnu/packages that will contain ↵ | pjotrp | |
| software that aligns with Guix upstream policies. | |||
| 2026-03-21 | Merge branch 'master' into pjotrp-w-claude | pjotrp | |
| 2026-03-21 | Fix (vg) v1.65.0 with vcflib build [AI] | pjotrp | |
| 2026-03-21 | Fix (vcflib) upgrade to latest 1.0.15 | pjotrp | |
| Includes vcflib CMake patch that will be merged upstream. | |||
| 2026-03-21 | Bump (vcflib) version to 1.0.15. Remove wfa2-lib-static package | pjotrp | |
| 2026-03-21 | fix (vcflib) zig support added back in | pjotrp | |
| 2026-03-21 | Updated (wfa2lib) to latest version and simplified package definition [AI] | pjotrp | |
| 2026-03-21 | simplify(vcflib): moving patches to main vcflib source tree [AI] | pjotrp | |
| 2026-03-21 | Added tests(vcflib) | pjotrp | |
| 2026-03-21 | Updated (vg) now uses last vcflib release without vendoring v1.0.7. | pjotrp | |
| Still, it would be good to fix the includes in vcflib itself. | |||
| 2026-03-20 | python-build: Add new package definition. | Frederick Muriuki Muriithi | |
| 2026-03-20 | python-typing-inspection: Add new package definition. | Frederick Muriuki Muriithi | |
| 2026-03-20 | python-backoff: Add new package definition. | Frederick Muriuki Muriithi | |
| 2026-03-20 | python-annotated-doc: Add new package definition. | Frederick Muriuki Muriithi | |
| 2026-03-20 | python-oslex: Add new package definition. | Frederick Muriuki Muriithi | |
| 2026-03-20 | python-mslex: Add new package definition. | Frederick Muriuki Muriithi | |
| 2026-03-20 | Move wfa2-lib ahead of where it is used. | Arun Isaac | |
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index : guix-bioinformatics | |
| Bioinformatics packages for GNU Guix |
| about summary refs log tree commit diff |