delete unused patch files

4 files changed, 0 insertions, 92 deletions

diff --git a/htslib-add-cram_to_bam.patch b/htslib-add-cram_to_bam.patch
deleted file mode 100644
index c90f7aa..0000000
--- a/htslib-add-cram_to_bam.patch
+++ /dev/null
@@ -1,27 +0,0 @@
-This patch adds the cram_to_bam function to the public interface of htslib,
-because it is used by code in Sambamba.
-
-by Roel Janssen <roel@gnu.org>
---- a/cram/cram_decode.c	2015-12-15 17:34:33.000000000 +0100
-+++ b/cram/cram_decode.c	2016-02-24 11:16:10.491808702 +0100
-@@ -2730,7 +2730,7 @@
-  * Returns the used size of the bam record on success
-  *         -1 on failure.
-  */
--static int cram_to_bam(SAM_hdr *bfd, cram_fd *fd, cram_slice *s,
-+int cram_to_bam(SAM_hdr *bfd, cram_fd *fd, cram_slice *s,
- 		       cram_record *cr, int rec, bam_seq_t **bam) {
-     int bam_idx, rg_len;
-     char name_a[1024], *name;
-diff -Naur htslib-1.3/cram/cram_decode.h htslib-1.3-patched/cram/cram_decode.h
---- a/cram/cram_decode.h	2015-12-15 17:34:33.000000000 +0100
-+++ b/cram/cram_decode.h	2016-02-24 11:15:04.556809864 +0100
-@@ -104,6 +104,8 @@
- int cram_decode_slice(cram_fd *fd, cram_container *c, cram_slice *s,
- 		      SAM_hdr *hdr);
- 
-+int cram_to_bam(SAM_hdr *bfd, cram_fd *fd, cram_slice *s,
-+                cram_record *cr, int rec, bam_seq_t **bam);
- 
- #ifdef __cplusplus
- }
diff --git a/ldc-disable-tests2.patch b/ldc-disable-tests2.patch
deleted file mode 100644
index 1203045..0000000
--- a/ldc-disable-tests2.patch
+++ /dev/null
@@ -1,31 +0,0 @@
-diff --git a/std/path.d b/std/path.d
-index a9f0bd8..b063862 100644
---- a/std/path.d
-+++ b/std/path.d
-@@ -4043,10 +4043,10 @@ version(unittest) import std.process : environment;
-         }
-         else
-         {
--            assert(expandTilde("~root") == "/root", expandTilde("~root"));
--            assert(expandTilde("~root/") == "/root/", expandTilde("~root/"));
-+            // assert(expandTilde("~root") == "/root", expandTilde("~root"));
-+            // assert(expandTilde("~root/") == "/root/", expandTilde("~root/"));
-         }
--        assert(expandTilde("~Idontexist/hey") == "~Idontexist/hey");
-+        // assert(expandTilde("~Idontexist/hey") == "~Idontexist/hey");
-     }
- }
- 
-diff --git a/std/socket.d b/std/socket.d
-index e901168..72c4026 100644
---- a/std/socket.d
-+++ b/std/socket.d
-@@ -804,7 +804,7 @@ class InternetHost
- }
- 
- ///
--@safe unittest
-+@safe version(skipunittest) unittest
- {
-     InternetHost ih = new InternetHost;
- 
diff --git a/ldc-druntime-finiTLSRanges.patch b/ldc-druntime-finiTLSRanges.patch
deleted file mode 100644
index 152f341..0000000
--- a/ldc-druntime-finiTLSRanges.patch
+++ /dev/null
@@ -1,24 +0,0 @@
-diff --git a/src/rt/sections_elf_shared.d b/src/rt/sections_elf_shared.d
-index a1ea73a..243e3f6 100644
---- a/src/rt/sections_elf_shared.d
-+++ b/src/rt/sections_elf_shared.d
-@@ -149,7 +149,8 @@ version (Shared)
- 
-     void finiTLSRanges(Array!(ThreadDSO)* tdsos)
-     {
--        tdsos.reset();
-+        // Disabling like static version - not sure this one is misbehaving though
-+        // tdsos.reset();
-     }
- 
-     void scanTLSRanges(Array!(ThreadDSO)* tdsos, scope ScanDG dg) nothrow
-@@ -234,7 +235,8 @@ else
- 
-     void finiTLSRanges(Array!(void[])* rngs)
-     {
--        rngs.reset();
-+        // Throws exception, see https://github.com/lomereiter/sambamba/issues/219#issuecomment-275838455
-+        // rngs.reset();
-     }
- 
-     void scanTLSRanges(Array!(void[])* rngs, scope ScanDG dg) nothrow
diff --git a/mongodb-add-version-file.patch b/mongodb-add-version-file.patch
deleted file mode 100644
index ffcb70e..0000000
--- a/mongodb-add-version-file.patch
+++ /dev/null
@@ -1,10 +0,0 @@
-This patch is used to replace the need for git.  It's a work-around
-for a problem described here: https://jira.mongodb.org/browse/SERVER-21317
-
-Patch by Roel Janssen <roel@gnu.org>
---- a/version.json	1970-01-01 01:00:00.000000000 +0100
-+++ b/version.json	2016-03-16 15:10:23.933578071 +0100
-@@ -0,0 +1,3 @@
-+{
-+    "version": "3.3.3-guix-"
-+}