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authorEfraim Flashner2022-04-03 14:19:38 +0300
committerEfraim Flashner2022-04-03 14:19:38 +0300
commit7e8a1de4b293e5e1d4c0c5e3694acb144a145635 (patch)
treecf554612728670c783a58a5f59068b7ba2914368
parentee118d7a5d56e52c360c3730bde818d61cacbceb (diff)
downloadguix-bioinformatics-7e8a1de4b293e5e1d4c0c5e3694acb144a145635.tar.gz
gn: Some packages upstreamed
-rw-r--r--gn/packages/crates-io.scm348
1 files changed, 33 insertions, 315 deletions
diff --git a/gn/packages/crates-io.scm b/gn/packages/crates-io.scm
index 7485327..c43b714 100644
--- a/gn/packages/crates-io.scm
+++ b/gn/packages/crates-io.scm
@@ -140,6 +140,7 @@ or any combination.")
(description "Rust CLI tools for manipulation of Jupyter Notebooks.")
(license #f)))) ; There is no license.
+;; replace fields with those from upstream
(define-public rust-clap-3.1
(package
(name "rust-clap")
@@ -153,8 +154,7 @@ or any combination.")
(base32 "08q1hkksfixybnrwrpm44xq028wbn9yr2hnzrax9hihyq8v39jfq"))))
(build-system cargo-build-system)
(arguments
- `(#:tests? #f ; Skip the tests for now
- #:cargo-inputs
+ `(#:cargo-inputs
(("rust-atty" ,rust-atty-0.2)
("rust-backtrace" ,rust-backtrace-0.3)
("rust-bitflags" ,rust-bitflags-1)
@@ -169,14 +169,13 @@ or any combination.")
("rust-textwrap" ,rust-textwrap-0.15)
("rust-unicase" ,rust-unicase-2)
("rust-yaml-rust" ,rust-yaml-rust-0.4))
- ;#:cargo-development-inputs
- ;(("rust-criterion" ,rust-criterion-0.3)
- ; ("rust-lazy-static" ,rust-lazy-static-1)
- ; ("rust-regex" ,rust-regex-1)
- ; ("rust-rustversion" ,rust-rustversion-1)
- ; ("rust-trybuild" ,rust-trybuild-1)
- ; ("rust-trycmd" ,rust-trycmd-0.12))
- ))
+ #:cargo-development-inputs
+ (("rust-criterion" ,rust-criterion-0.3)
+ ("rust-lazy-static" ,rust-lazy-static-1)
+ ("rust-regex" ,rust-regex-1)
+ ("rust-rustversion" ,rust-rustversion-1)
+ ("rust-trybuild" ,rust-trybuild-1)
+ ("rust-trycmd" ,rust-trycmd-0.12))))
(home-page "https://github.com/clap-rs/clap")
(synopsis
"A simple to use, efficient, and full-featured Command Line Argument Parser")
@@ -185,6 +184,8 @@ or any combination.")
Argument Parser")
(license (list license:expat license:asl2.0))))
+;; ready to upstream, WITH rust-clap-derive
+;; replace fields with those from upstream.
(define-public rust-clap-derive-3.1
(package
(name "rust-clap-derive")
@@ -211,33 +212,6 @@ or any combination.")
"Parse command line argument by defining a struct, derive crate.")
(license (list license:expat license:asl2.0))))
-(define-public rust-os-str-bytes-6
- (package
- (name "rust-os-str-bytes")
- (version "6.0.0")
- (source
- (origin
- (method url-fetch)
- (uri (crate-uri "os-str-bytes" version))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32 "0r5z5xds2wzzqlqjaw96dpjsz5nqyzc1rflm4mh09aa32qyl88lf"))))
- (build-system cargo-build-system)
- (arguments
- `(#:cargo-inputs
- (("rust-memchr" ,rust-memchr-2)
- ("rust-print-bytes" ,rust-print-bytes-0.5)
- ("rust-uniquote" ,rust-uniquote-3))
- ;#:cargo-development-inputs
- ;(("rust-getrandom" ,rust-getrandom-0.2))
- ))
- (home-page "https://github.com/dylni/os_str_bytes")
- (synopsis
- "Utilities for converting between byte sequences and platform-native strings")
- (description
- "Utilities for converting between byte sequences and platform-native strings")
- (license (list license:expat license:asl2.0))))
-
(define-public rust-textwrap-0.15
(package
(name "rust-textwrap")
@@ -251,20 +225,20 @@ or any combination.")
(base32 "1yw513k61lfiwgqrfvsjw1a5wpvm0azhpjr2kr0jhnq9c56is55i"))))
(build-system cargo-build-system)
(arguments
- `(#:tests? #f ; Skip tests for now
+ `(#:skip-build? #t ; Not all inputs packaged
+ ;#:tests? #f ; Skip tests for now
#:cargo-inputs
(("rust-hyphenation" ,rust-hyphenation-0.8)
("rust-smawk" ,rust-smawk-0.3)
("rust-terminal-size" ,rust-terminal-size-0.1)
("rust-unicode-linebreak" ,rust-unicode-linebreak-0.1)
("rust-unicode-width" ,rust-unicode-width-0.1))
- ;#:cargo-development-inputs
- ;(("rust-criterion" ,rust-criterion-0.3)
- ; ("rust-lipsum" ,rust-lipsum-0.8)
- ; ("rust-termion" ,rust-termion-1)
- ; ("rust-unic-emoji-char" ,rust-unic-emoji-char-0.9)
- ; ("rust-version-sync" ,rust-version-sync-0.9))
- ))
+ #:cargo-development-inputs
+ (("rust-criterion" ,rust-criterion-0.3)
+ ("rust-lipsum" ,rust-lipsum-0.8)
+ ("rust-termion" ,rust-termion-1)
+ ;("rust-unic-emoji-char" ,rust-unic-emoji-char-0.9)
+ ("rust-version-sync" ,rust-version-sync-0.9))))
(home-page "https://github.com/mgeisler/textwrap")
(synopsis
"Powerful library for word wrapping, indenting, and dedenting strings")
@@ -285,7 +259,9 @@ or any combination.")
(base32 "1rwa5nzq8c5zg7lqmpkf7hyib415yxshd9amp911y8w1zss4s38p"))))
(build-system cargo-build-system)
(arguments
- `(#:cargo-inputs
+ `(;#:skip-build? #t ; Not all inputs at correct versions?
+ ;#:tests? #f ; Skip tests for now
+ #:cargo-inputs
(("rust-backtrace" ,rust-backtrace-0.3)
("rust-concolor" ,rust-concolor-0.0.8)
("rust-content-inspector" ,rust-content-inspector-0.2)
@@ -312,221 +288,6 @@ or any combination.")
(description "Snapshot testing for a herd of CLI tests")
(license (list license:expat license:asl2.0))))
-(define-public rust-smawk-0.3
- (package
- (name "rust-smawk")
- (version "0.3.1")
- (source
- (origin
- (method url-fetch)
- (uri (crate-uri "smawk" version))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32 "0hv0q1mw1r1brk7v3g4a80j162p7g1dri4bdidykrakzfqjd4ypn"))))
- (build-system cargo-build-system)
- (arguments
- `(#:cargo-inputs
- (("rust-ndarray" ,rust-ndarray-0.14))
- ;#:cargo-development-inputs
- ;(("rust-num-traits" ,rust-num-traits-0.2)
- ; ("rust-rand" ,rust-rand-0.8)
- ; ("rust-rand-chacha" ,rust-rand-chacha-0.3)
- ; ("rust-version-sync" ,rust-version-sync-0.9))
- ))
- (home-page "https://github.com/mgeisler/smawk")
- (synopsis "Functions for finding row-minima in a totally monotone matrix.")
- (description
- "This package provides functions for finding row-minima in a totally monotone
-matrix.")
- (license license:expat)))
-
-(define-public rust-unicode-linebreak-0.1
- (package
- (name "rust-unicode-linebreak")
- (version "0.1.2")
- (source
- (origin
- (method url-fetch)
- (uri (crate-uri "unicode-linebreak" version))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32 "0grq6bsn967q4vpifld53s7a140nlmpq5vy8ghgr73f4n2mdqlis"))))
- (build-system cargo-build-system)
- (arguments
- `(#:cargo-inputs
- (("rust-regex" ,rust-regex-1))))
- (home-page "https://github.com/axelf4/unicode-linebreak")
- (synopsis "Implementation of the Unicode Line Breaking Algorithm")
- (description "Implementation of the Unicode Line Breaking Algorithm")
- (license license:asl2.0)))
-
-(define-public rust-lipsum-0.8
- (package
- (name "rust-lipsum")
- (version "0.8.0")
- (source
- (origin
- (method url-fetch)
- (uri (crate-uri "lipsum" version))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32 "0sn5k0hgx099x2qdx0xlx8a5b74sfc55qnbyrhnh72baqxqp5vj2"))))
- (build-system cargo-build-system)
- (arguments
- `(#:cargo-inputs
- (("rust-rand" ,rust-rand-0.8)
- ("rust-rand-chacha" ,rust-rand-chacha-0.3))
- ;#:cargo-development-inputs
- ;(("rust-version-sync" ,rust-version-sync-0.9))
- ))
- (home-page "https://github.com/mgeisler/lipsum/")
- (synopsis
- "Lipsum is a lorem ipsum text generation library. Use this if you need
-some filler text for your application.
-
-The text is generated using a simple Markov chain, which you can also
-instantiate to generate your own pieces of pseudo-random text.
-")
- (description
- "Lipsum is a lorem ipsum text generation library. Use this if you need some
-filler text for your application.
-
-The text is generated using a simple Markov chain, which you can also
-instantiate to generate your own pieces of pseudo-random text.")
- (license license:expat)))
-
-(define-public rust-print-bytes-0.5
- (package
- (name "rust-print-bytes")
- (version "0.5.0")
- (source
- (origin
- (method url-fetch)
- (uri (crate-uri "print-bytes" version))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32 "0d4i9y3jx1chi6w97a8rgdbwm9g3cppr53rw53zl6fcaq31qx0b6"))))
- (build-system cargo-build-system)
- (arguments
- `(#:tests? #f ; Skip tests for now
- #:cargo-inputs
- (("rust-winapi" ,rust-winapi-0.3))
- ;#:cargo-development-inputs
- ;(("rust-os-str-bytes" ,rust-os-str-bytes-4))
- ))
- (home-page "https://github.com/dylni/print_bytes")
- (synopsis "Print bytes as losslessly as possible")
- (description "Print bytes as losslessly as possible")
- (license (list license:expat license:asl2.0))))
-
-(define-public rust-uniquote-3
- (package
- (name "rust-uniquote")
- (version "3.1.0")
- (source
- (origin
- (method url-fetch)
- (uri (crate-uri "uniquote" version))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32 "1bkl0n41yvs415mqny4b434kr456ysnb3dhic1zrrzppwx95jvxa"))))
- (build-system cargo-build-system)
- (home-page "https://github.com/dylni/uniquote")
- (synopsis "Quote strings for clear display in output")
- (description "Quote strings for clear display in output")
- (license (list license:expat license:asl2.0))))
-
-(define-public rust-ndarray-0.14
- (package
- (name "rust-ndarray")
- (version "0.14.0")
- (source
- (origin
- (method url-fetch)
- (uri (crate-uri "ndarray" version))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32 "011wqzmrd9gpfcfvy1xfbskqfiahn96pmi2d0r9x34d682amq3bc"))))
- (build-system cargo-build-system)
- (arguments
- `(#:skip-build? #t
- #:cargo-inputs
- (("rust-approx" ,rust-approx-0.4)
- ;("rust-blas-src" ,rust-blas-src-0.6)
- ("rust-cblas-sys" ,rust-cblas-sys-0.1)
- ("rust-matrixmultiply" ,rust-matrixmultiply-0.2)
- ("rust-num-complex" ,rust-num-complex-0.3)
- ("rust-num-integer" ,rust-num-integer-0.1)
- ("rust-num-traits" ,rust-num-traits-0.2)
- ("rust-rawpointer" ,rust-rawpointer-0.2)
- ("rust-rayon" ,rust-rayon-1)
- ("rust-serde" ,rust-serde-1))
- ;#:cargo-development-inputs
- ;(("rust-approx" ,rust-approx-0.4)
- ; ("rust-defmac" ,rust-defmac-0.2)
- ; ("rust-itertools" ,rust-itertools-0.9)
- ; ("rust-quickcheck" ,rust-quickcheck-0.9))
- ))
- (home-page "https://github.com/rust-ndarray/ndarray")
- (synopsis
- "An n-dimensional array for general elements and for numerics. Lightweight array views and slicing; views support chunking and splitting.")
- (description
- "An n-dimensional array for general elements and for numerics. Lightweight array
-views and slicing; views support chunking and splitting.")
- (license (list license:expat license:asl2.0))))
-
-(define-public rust-version-sync-0.9
- (package
- (name "rust-version-sync")
- (version "0.9.4")
- (source
- (origin
- (method url-fetch)
- (uri (crate-uri "version-sync" version))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32 "1w0v20p6k13yhfmgmcwhgy3371znyqcn83lhrf47swq7xhf81l4r"))))
- (build-system cargo-build-system)
- (arguments
- `(#:cargo-inputs
- (("rust-proc-macro2" ,rust-proc-macro2-1)
- ("rust-pulldown-cmark" ,rust-pulldown-cmark-0.8)
- ("rust-regex" ,rust-regex-1)
- ("rust-semver" ,rust-semver-1)
- ("rust-syn" ,rust-syn-1)
- ("rust-toml" ,rust-toml-0.5)
- ("rust-url" ,rust-url-2))
- #:cargo-development-inputs
- (("rust-tempfile" ,rust-tempfile-3))))
- (home-page "https://github.com/mgeisler/version-sync")
- (synopsis
- "Crate for ensuring that version numbers in README files and other files are kept in sync with the crate version.")
- (description
- "Crate for ensuring that version numbers in README files and other files are kept
-in sync with the crate version.")
- (license license:expat)))
-
-(define-public rust-os-pipe-1
- (package
- (name "rust-os-pipe")
- (version "1.0.1")
- (source
- (origin
- (method url-fetch)
- (uri (crate-uri "os-pipe" version))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32 "0mczqmqrkzmln4xg5ki1gwgykf4dsii0h4p7fxf667889ysz54ic"))))
- (build-system cargo-build-system)
- (arguments
- `(#:cargo-inputs
- (("rust-libc" ,rust-libc-0.2)
- ("rust-winapi" ,rust-winapi-0.3))))
- (home-page "https://github.com/oconnor663/os_pipe.rs")
- (synopsis "a cross-platform library for opening OS pipes")
- (description "a cross-platform library for opening OS pipes")
- (license license:expat)))
-
(define-public rust-toml-edit-0.12
(package
(name "rust-toml-edit")
@@ -540,66 +301,23 @@ in sync with the crate version.")
(base32 "0wx4wd849bmkqj0gdi041gmpfpvlyhy2ha4zpin69yw9d9npl8cl"))))
(build-system cargo-build-system)
(arguments
- `(#:cargo-inputs
+ `(;#:skip-build? #t ; Not all inputs packaged
+ ;#:tests? #f ; Skip tests for now
+ #:cargo-inputs
(("rust-combine" ,rust-combine-4)
("rust-indexmap" ,rust-indexmap-1)
("rust-itertools" ,rust-itertools-0.10)
("rust-kstring" ,rust-kstring-1)
("rust-serde" ,rust-serde-1))
- ;#:cargo-development-inputs
- ;(("rust-criterion" ,rust-criterion-0.3)
- ; ("rust-fs-snapshot" ,rust-fs-snapshot-0.1)
- ; ("rust-pretty-assertions" ,rust-pretty-assertions-1)
- ; ("rust-serde-json" ,rust-serde-json-1)
- ; ("rust-toml" ,rust-toml-0.5)
- ; ("rust-toml-test-harness" ,rust-toml-test-harness-0.3))
- ))
+ #:cargo-development-inputs
+ (("rust-criterion" ,rust-criterion-0.3)
+ ;("rust-fs-snapshot" ,rust-fs-snapshot-0.1)
+ ;("rust-pretty-assertions" ,rust-pretty-assertions-1)
+ ("rust-serde-json" ,rust-serde-json-1)
+ ("rust-toml" ,rust-toml-0.5)
+ ;("rust-toml-test-harness" ,rust-toml-test-harness-0.3)
+ )))
(home-page "https://github.com/ordian/toml_edit")
(synopsis "Yet another format-preserving TOML parser.")
(description "Yet another format-preserving TOML parser.")
(license (list license:expat license:asl2.0))))
-
-(define-public rust-kstring-1
- (package
- (name "rust-kstring")
- (version "1.1.0")
- (source
- (origin
- (method url-fetch)
- (uri (crate-uri "kstring" version))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32 "1r4n9fa5scikqvl736nxghcfa6s3b07xz61w43hyzs2qb3wmd3nk"))))
- (build-system cargo-build-system)
- (arguments
- `(#:cargo-inputs
- (("rust-document-features" ,rust-document-features-0.2)
- ("rust-serde" ,rust-serde-1)
- ("rust-static-assertions" ,rust-static-assertions-1))
- #:cargo-development-inputs
- (("rust-criterion" ,rust-criterion-0.3)
- ("rust-proptest" ,rust-proptest-1))))
- (home-page "https://github.com/cobalt-org/kstring")
- (synopsis "Key String: optimized for map keys")
- (description "Key String: optimized for map keys")
- (license (list license:expat license:asl2.0))))
-
-(define-public rust-document-features-0.2
- (package
- (name "rust-document-features")
- (version "0.2.1")
- (source
- (origin
- (method url-fetch)
- (uri (crate-uri "document-features" version))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32 "121wr2bd8a4s5i5yrxjz8c5amw2l69xmqqma86x6y4xmcgyhj75h"))))
- (build-system cargo-build-system)
- (home-page "https://slint-ui.com")
- (synopsis
- "Extract documentation for the feature flags from comments in Cargo.toml")
- (description
- "Extract documentation for the feature flags from comments in Cargo.toml")
- (license (list license:expat license:asl2.0))))
-