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"""Utilities for CLI parsers specific to R/qtl2 parsing scripts."""
from pathlib import Path
from argparse import ArgumentParser
def add_bundle_argument(parser: ArgumentParser) -> ArgumentParser:
"""Add the `rqtl2bundle` argument."""
parser.add_argument("rqtl2bundle",
type=Path,
help="Path to R/qtl2 bundle zip file.")
return parser
def add_datasetid_argument(parser: ArgumentParser) -> ArgumentParser:
"""Add the `datasetid` argument."""
parser.add_argument("datasetid",
type=int,
help="The dataset to which the data belongs.")
return parser
def add_common_arguments(parser: ArgumentParser) -> ArgumentParser:
"""Add common arguments to the CLI parser."""
return add_bundle_argument(add_datasetid_argument(parser))
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