"""Utilities for CLI parsers specific to R/qtl2 parsing scripts.""" from pathlib import Path from argparse import ArgumentParser def add_bundle_argument(parser: ArgumentParser) -> ArgumentParser: """Add the `rqtl2bundle` argument.""" parser.add_argument("rqtl2bundle", type=Path, help="Path to R/qtl2 bundle zip file.") return parser def add_datasetid_argument(parser: ArgumentParser) -> ArgumentParser: """Add the `datasetid` argument.""" parser.add_argument("datasetid", type=int, help="The dataset to which the data belongs.") return parser def add_common_arguments(parser: ArgumentParser) -> ArgumentParser: """Add common arguments to the CLI parser.""" return add_bundle_argument(add_datasetid_argument(parser))