| Age | Commit message (Expand) | Author |
|---|
| 2025-07-01 | Ignore any optional files that are not provided. | Frederick Muriuki Muriithi |
| 2025-07-01 | Remove misplaced UI elements: Publications are handled elsewhere. | Frederick Muriuki Muriithi |
| 2025-07-01 | Remove unused feature•••The feature is implemented elsewhere (GN2) in a better way.
| Frederick Muriuki Muriithi |
| 2025-07-01 | Enable scrolling and paging for both species and populations. | Frederick Muriuki Muriithi |
| 2025-07-01 | Fix publications UI. | Frederick Muriuki Muriithi |
| 2025-06-30 | Allow independent transposition of each file•••* Rework UI to provide independent selection of whether or not each
file is transposed
* Update the backend code to individually set the transposition status
for each file independently.
| Frederick Muriuki Muriithi |
| 2025-06-26 | Narrow search to only uploaded traits. | Frederick Muriuki Muriithi |
| 2025-06-25 | Collapse the DataTables' viewport if there's less data. | Frederick Muriuki Muriithi |
| 2025-06-24 | Use positional parameters rather than named ones.•••Named parameters were causing problems on staging, where the names
would be converted into bytestrings and then used to index into the
dictionaries, leading to `KeyError` exceptions.
| Frederick Muriuki Muriithi |
| 2025-06-24 | Add notification for users that data is not saved yet. | Frederick Muriuki Muriithi |
| 2025-06-24 | Use pathlib.Path object for file paths. | Frederick Muriuki Muriithi |
| 2025-06-17 | Allow users to provide transposed files. | Frederick Muriuki Muriithi |
| 2025-06-17 | Fix documentation: The rows and columns were interchanged in docs. | Frederick Muriuki Muriithi |
| 2025-06-12 | Allow a publication to *NOT* have a PubMed ID. | Frederick Muriuki Muriithi |
| 2025-06-12 | Create a visual separation of fields. | Frederick Muriuki Muriithi |
| 2025-06-12 | Improve publication fetching for datatables. | Frederick Muriuki Muriithi |
| 2025-06-12 | Improve logger setup. | Frederick Muriuki Muriithi |
| 2025-06-11 | Limit returned results•••Limit the number of results returned to make page more
responsive. This is buggy at this point — it doesn't do exactly what I
expect, e.g. when I attempt to scroll, or use pagination, it doesn't
actually display all the pages as expected.
| Frederick Muriuki Muriithi |
| 2025-06-11 | Enable server-side searching. | Frederick Muriuki Muriithi |
| 2025-06-11 | Specify searchable columns. | Frederick Muriuki Muriithi |
| 2025-06-11 | Fix issues caught by linter. | Frederick Muriuki Muriithi |
| 2025-06-10 | Display the success page. | Frederick Muriuki Muriithi |
| 2025-06-10 | Bug: The Phenotype datasets need the InbredSet.Name as a prefix•••The Phenotype datasets need the InbredSet.Name, (not the
InbredSet.InbredSetCode) as a prefix for the data to be found and
listed in the GeneNetwork menu.
| Frederick Muriuki Muriithi |
| 2025-06-10 | Pass on the publication to the next job. | Frederick Muriuki Muriithi |
| 2025-06-10 | Bug: Fix logging. | Frederick Muriuki Muriithi |
| 2025-06-10 | Cleanup UI detritus. | Frederick Muriuki Muriithi |
| 2025-06-10 | Provide handler for `load-new-phenotypes-data` jobs. | Frederick Muriuki Muriithi |
| 2025-06-10 | Provide generalised success and error handling for the jobs. | Frederick Muriuki Muriithi |
| 2025-06-10 | On success, redirect to job status check page. | Frederick Muriuki Muriithi |
| 2025-06-10 | Display the error. | Frederick Muriuki Muriithi |
| 2025-06-10 | Set loglevel for background job's launcher. | Frederick Muriuki Muriithi |
| 2025-06-05 | Request token for use with script to update authorisations•••After the script has completed loading the data into the database, the
user who uploads the data will need to access the data they've
uploaded.
This commit requests a new token to use with the script for updating
the authorisations as appropriate, to grant the user access to their
data.
| Frederick Muriuki Muriithi |
| 2025-06-03 | Save data with `LOAD DATA INFILE …` query•••To help speed up the saving of the data (for really huge files) into
the database, use the `LOAD DATA INFILE …` command if available, and
if not fallback to the one using raw queries.
| Frederick Muriuki Muriithi |
| 2025-06-03 | Increase number of rows per query. | Frederick Muriuki Muriithi |
| 2025-06-03 | Debug the query: useful to figure out what's happening. | Frederick Muriuki Muriithi |
| 2025-06-03 | Memory saving: Don't reload saved data•••We already have all the data in memory, so we do not need to reload it
and keep yet another copy.
| Frederick Muriuki Muriithi |
| 2025-06-02 | Add some debugging statements. | Frederick Muriuki Muriithi |
| 2025-06-02 | Parametrize the "DataId" column for different tables. | Frederick Muriuki Muriithi |
| 2025-06-02 | Explicitly query for newly entered data.•••The `cursor.executemany()` call only returned the last row that was
inserted, rather than ALL the rows. This is not the correct thing to
do, therefore, this commit fixes that by explicitly querying for all
the newly entered data.
| Frederick Muriuki Muriithi |
| 2025-05-30 | Add dataset_id and bundle path to job metadata. | Frederick Muriuki Muriithi |
| 2025-05-30 | Fix typo: Fix table name. | Frederick Muriuki Muriithi |
| 2025-05-30 | Bug: Loop until the data is exhausted. | Frederick Muriuki Muriithi |
| 2025-05-30 | Fix typo, and bug. | Frederick Muriuki Muriithi |
| 2025-05-30 | Fix indentation. | Frederick Muriuki Muriithi |
| 2025-05-30 | Use full table names rather than aliases•••Using aliases leads to errors when you have to use table locking to
prevent data corruption. This commit updates queries to use the full
table names rather than aliases, in order to prevent such troubles.
| Frederick Muriuki Muriithi |
| 2025-05-28 | Add javascript debugging function. | Frederick Muriuki Muriithi |
| 2025-05-19 | Handle case where the given publication_id does not exist. | Frederick Muriuki Muriithi |
| 2025-05-19 | Provide extra metadata to the job. | Frederick Muriuki Muriithi |
| 2025-05-19 | Provide missing URI to the MariaDB database to the script. | Frederick Muriuki Muriithi |
| 2025-05-19 | Add function to save the numerical data for phenotypes. | Frederick Muriuki Muriithi |
