| Age | Commit message (Expand) | Author |
|---|
| 2025-07-14 | Leave cache's hash method uninitialized. | Frederick Muriuki Muriithi |
| 2025-07-14 | Fix linting issues. | Frederick Muriuki Muriithi |
| 2025-07-14 | Provide timeouts for requests calls. | Frederick Muriuki Muriithi |
| 2025-07-14 | Use `yield from …` form.•••Use the `yield from` form rather than iterating through the elements
of the built sequence.
| Frederick Muriuki Muriithi |
| 2025-07-14 | Fix imports•••Remove unused imports, update old imports to newer forms and add
missing imports.
| Frederick Muriuki Muriithi |
| 2025-07-14 | Refactor out common functionality into separate function. | Frederick Muriuki Muriithi |
| 2025-07-14 | Do not enter IDs in files in the description field. | Frederick Muriuki Muriithi |
| 2025-07-14 | Mark feature as not-implemented. | Frederick Muriuki Muriithi |
| 2025-07-14 | Fix tooltip text. | Frederick Muriuki Muriithi |
| 2025-07-14 | Allow adding new samples even where there are existing ones. | Frederick Muriuki Muriithi |
| 2025-07-08 | Fix entry/selection of population families.•••Populations can be grouped into families for presentation in the
menus. They can also be left ungrouped. These "families" are general
categories of data, whose only effect is to present the selection of
the populations from the menus in a more organised form.
The families can also differ from species to species, though there are
some very general categories that span multiple (all?) species.
This commit takes all the above into consideration, relaxing the entry
constraints and making entry of the families a lot more flexible.
| Frederick Muriuki Muriithi |
| 2025-07-02 | Update descriptions and abbreviations•••- Add the description to both the Original and Post-Publication
fields.
- Set the abbreviation fields to the identifier in the files.
| Frederick Muriuki Muriithi |
| 2025-07-02 | Allow upload of CSV or TSV files ending with the '.txt' extension. | Frederick Muriuki Muriithi |
| 2025-07-01 | Bugfix: The value needs to be a tuple or list. | Frederick Muriuki Muriithi |
| 2025-07-01 | Ignore any optional files that are not provided. | Frederick Muriuki Muriithi |
| 2025-07-01 | Remove misplaced UI elements: Publications are handled elsewhere. | Frederick Muriuki Muriithi |
| 2025-07-01 | Remove unused feature•••The feature is implemented elsewhere (GN2) in a better way.
| Frederick Muriuki Muriithi |
| 2025-07-01 | Enable scrolling and paging for both species and populations. | Frederick Muriuki Muriithi |
| 2025-07-01 | Fix publications UI. | Frederick Muriuki Muriithi |
| 2025-06-30 | Allow independent transposition of each file•••* Rework UI to provide independent selection of whether or not each
file is transposed
* Update the backend code to individually set the transposition status
for each file independently.
| Frederick Muriuki Muriithi |
| 2025-06-26 | Narrow search to only uploaded traits. | Frederick Muriuki Muriithi |
| 2025-06-25 | Collapse the DataTables' viewport if there's less data. | Frederick Muriuki Muriithi |
| 2025-06-24 | Use positional parameters rather than named ones.•••Named parameters were causing problems on staging, where the names
would be converted into bytestrings and then used to index into the
dictionaries, leading to `KeyError` exceptions.
| Frederick Muriuki Muriithi |
| 2025-06-24 | Add notification for users that data is not saved yet. | Frederick Muriuki Muriithi |
| 2025-06-24 | Use pathlib.Path object for file paths. | Frederick Muriuki Muriithi |
| 2025-06-17 | Allow users to provide transposed files. | Frederick Muriuki Muriithi |
| 2025-06-17 | Fix documentation: The rows and columns were interchanged in docs. | Frederick Muriuki Muriithi |
| 2025-06-12 | Allow a publication to *NOT* have a PubMed ID. | Frederick Muriuki Muriithi |
| 2025-06-12 | Create a visual separation of fields. | Frederick Muriuki Muriithi |
| 2025-06-12 | Improve publication fetching for datatables. | Frederick Muriuki Muriithi |
| 2025-06-12 | Improve logger setup. | Frederick Muriuki Muriithi |
| 2025-06-11 | Limit returned results•••Limit the number of results returned to make page more
responsive. This is buggy at this point — it doesn't do exactly what I
expect, e.g. when I attempt to scroll, or use pagination, it doesn't
actually display all the pages as expected.
| Frederick Muriuki Muriithi |
| 2025-06-11 | Enable server-side searching. | Frederick Muriuki Muriithi |
| 2025-06-11 | Specify searchable columns. | Frederick Muriuki Muriithi |
| 2025-06-11 | Fix issues caught by linter. | Frederick Muriuki Muriithi |
| 2025-06-10 | Display the success page. | Frederick Muriuki Muriithi |
| 2025-06-10 | Bug: The Phenotype datasets need the InbredSet.Name as a prefix•••The Phenotype datasets need the InbredSet.Name, (not the
InbredSet.InbredSetCode) as a prefix for the data to be found and
listed in the GeneNetwork menu.
| Frederick Muriuki Muriithi |
| 2025-06-10 | Pass on the publication to the next job. | Frederick Muriuki Muriithi |
| 2025-06-10 | Bug: Fix logging. | Frederick Muriuki Muriithi |
| 2025-06-10 | Cleanup UI detritus. | Frederick Muriuki Muriithi |
| 2025-06-10 | Provide handler for `load-new-phenotypes-data` jobs. | Frederick Muriuki Muriithi |
| 2025-06-10 | Provide generalised success and error handling for the jobs. | Frederick Muriuki Muriithi |
| 2025-06-10 | On success, redirect to job status check page. | Frederick Muriuki Muriithi |
| 2025-06-10 | Display the error. | Frederick Muriuki Muriithi |
| 2025-06-10 | Set loglevel for background job's launcher. | Frederick Muriuki Muriithi |
| 2025-06-05 | Request token for use with script to update authorisations•••After the script has completed loading the data into the database, the
user who uploads the data will need to access the data they've
uploaded.
This commit requests a new token to use with the script for updating
the authorisations as appropriate, to grant the user access to their
data.
| Frederick Muriuki Muriithi |
| 2025-06-03 | Save data with `LOAD DATA INFILE …` query•••To help speed up the saving of the data (for really huge files) into
the database, use the `LOAD DATA INFILE …` command if available, and
if not fallback to the one using raw queries.
| Frederick Muriuki Muriithi |
| 2025-06-03 | Increase number of rows per query. | Frederick Muriuki Muriithi |
| 2025-06-03 | Debug the query: useful to figure out what's happening. | Frederick Muriuki Muriithi |
| 2025-06-03 | Memory saving: Don't reload saved data•••We already have all the data in memory, so we do not need to reload it
and keep yet another copy.
| Frederick Muriuki Muriithi |
