| Age | Commit message (Expand) | Author |
|---|
| 2025-05-30 | Use full table names rather than aliases•••Using aliases leads to errors when you have to use table locking to
prevent data corruption. This commit updates queries to use the full
table names rather than aliases, in order to prevent such troubles.
| Frederick Muriuki Muriithi |
| 2025-05-28 | Add javascript debugging function. | Frederick Muriuki Muriithi |
| 2025-05-19 | Handle case where the given publication_id does not exist. | Frederick Muriuki Muriithi |
| 2025-05-19 | Provide extra metadata to the job. | Frederick Muriuki Muriithi |
| 2025-05-19 | Provide missing URI to the MariaDB database to the script. | Frederick Muriuki Muriithi |
| 2025-05-19 | Add function to save the numerical data for phenotypes. | Frederick Muriuki Muriithi |
| 2025-05-19 | Setup log format for the application. | Frederick Muriuki Muriithi |
| 2025-05-12 | Use builtin functions to compute log level. | Frederick Muriuki Muriithi |
| 2025-05-12 | Break "merge file" race-condition•••Multiple requests/threads were attempting to merge the same file,
leading to race conditions, and sometimes, rarely, it would lead to
actual data corruption.
| Frederick Muriuki Muriithi |
| 2025-05-12 | BugFix: Don't scroll to top of page on clicking "Browse" buttons.•••This fixes the behaviour where clicking the "Browse" buttons on any of
the resumable elements, the viewport would scroll to the top of the page.
| Frederick Muriuki Muriithi |
| 2025-05-09 | Use more of the screen width for content on smaller screens.•••Display only the links and main content on screens smaller than 20 CSS
inches — the idea is that laptop screens and smaller will only display
the links and the main content, leaving the sidebar content hidden.
| Frederick Muriuki Muriithi |
| 2025-05-05 | Init setup and script for async job to load phenotypes into database | Frederick Muriuki Muriithi |
| 2025-05-05 | Save/Create new phenotypes in the database. | Frederick Muriuki Muriithi |
| 2025-05-05 | Provide endpoint for loading data after QC is successful. | Frederick Muriuki Muriithi |
| 2025-05-05 | Require that the publication is present. | Frederick Muriuki Muriithi |
| 2025-05-05 | Move previews below each item rather than being in the sidebar. | Frederick Muriuki Muriithi |
| 2025-05-05 | Include the publication when provided. | Frederick Muriuki Muriithi |
| 2025-05-05 | Allow plain text files too. | Frederick Muriuki Muriithi |
| 2025-05-02 | PoC: Use independent module-level loggers with application•••Using flask.current_app.logger for logging in modules leads to the
modules requiring an app context, even when the module itself could be
used outside of the application.
This commit provides a proof-of-concept (really, me finally putting in
the effort to figure out logging) for how we could allow independent
loggers at the module level, that can then be hooked up to the main
logging in the system in question.
| Frederick Muriuki Muriithi |
| 2025-05-02 | Format abstracts a little better. | Frederick Muriuki Muriithi |
| 2025-04-28 | Provide correct redirection uri, and data. | Frederick Muriuki Muriithi |
| 2025-04-28 | Encode data to UTF-8 to prevent persistence errors. | Frederick Muriuki Muriithi |
| 2025-04-28 | Search for radio was slow for some reason. | Frederick Muriuki Muriithi |
| 2025-04-28 | Allow selection from existing publications. | Frederick Muriuki Muriithi |
| 2025-04-28 | Do not auto-update publication details on conflict•••Auto-update of a publication's details on an "insert conflict" would
lead to a bug where publications could be overwritten with the wrong
information. Rather than auto-update, explicitly indicate the error,
and let the user manually edit the record to avoid data inconsistency.
| Frederick Muriuki Muriithi |
| 2025-04-28 | Implement creating publications. | Frederick Muriuki Muriithi |
| 2025-04-28 | Add logging.•••Without this logging statement, the chunk merging fails with an error
that it cannot find one of the chunks when attempting to delete
it. That error disappears as soon as I attempt to log out the error
and debug.
| Frederick Muriuki Muriithi |
| 2025-04-28 | Enable autofill of information from PubMed. | Frederick Muriuki Muriithi |
| 2025-04-28 | Move functions to fetch pubmed data out into a separate js file. | Frederick Muriuki Muriithi |
| 2025-04-28 | Move generic utility functions to the utils.js file. | Frederick Muriuki Muriithi |
| 2025-04-28 | Provide UI for publication creation. | Frederick Muriuki Muriithi |
| 2025-04-28 | Mark unimplemented features. | Frederick Muriuki Muriithi |
| 2025-04-28 | Provide tooltip text. | Frederick Muriuki Muriithi |
| 2025-04-28 | Display logged in user's email. | Frederick Muriuki Muriithi |
| 2025-04-28 | View a publication's details. | Frederick Muriuki Muriithi |
| 2025-04-28 | Fetch phenotypes linked to a particular publication. | Frederick Muriuki Muriithi |
| 2025-04-28 | Fetch a publication by its ID. | Frederick Muriuki Muriithi |
| 2025-04-28 | Initialise entry-point for managing publications. | Frederick Muriuki Muriithi |
| 2025-04-28 | Fetch *ALL* publications from the database. | Frederick Muriuki Muriithi |
| 2025-04-25 | Fix display of upload errors for samples•••* Update the uri to fit in with existing paradigm
* Pass the species and population to the endpoint
| Frederick Muriuki Muriithi |
| 2025-04-21 | Update the previews, in the case where resumables exist. | Frederick Muriuki Muriithi |
| 2025-04-21 | Improve check for file existence. | Frederick Muriuki Muriithi |
| 2025-04-21 | Associate each preview table with appropriate resumable object. | Frederick Muriuki Muriithi |
| 2025-04-21 | Update to bootstrap 5 classes. | Frederick Muriuki Muriithi |
| 2025-04-21 | Proceed to jobs status update page. | Frederick Muriuki Muriithi |
| 2025-04-21 | Implement rudimentary status update page for background jobs. | Frederick Muriuki Muriithi |
| 2025-04-21 | Use module-specific logger. | Frederick Muriuki Muriithi |
| 2025-04-21 | Add "DataId" to top-level trait details.•••The `DataId` is unique in the `PublishXRef` table.
| Frederick Muriuki Muriithi |
| 2025-04-14 | Fix typo. | Frederick Muriuki Muriithi |
| 2025-04-14 | Move common fieldnames into exportable variable. | Frederick Muriuki Muriithi |
