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gn-uploader
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load-raw-data-no-parsing
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gn-uploader: Data uploader for GeneNetwork
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2025-05-30
Use full table names rather than aliases
Frederick Muriuki Muriithi
2025-05-28
Bug: Fix actual data value, not result set.
Frederick Muriuki Muriithi
2025-05-28
Bug: Add missing commas.
Frederick Muriuki Muriithi
2025-05-28
Maintain single list of tables — build logs and query from list
Frederick Muriuki Muriithi
2025-05-28
Add missing import.
Frederick Muriuki Muriithi
2025-05-28
Pass path to bundle extraction dir, and make paths relative to it.
Frederick Muriuki Muriithi
2025-05-28
Add javascript debugging function.
Frederick Muriuki Muriithi
2025-05-19
Extract the bundle first.
Frederick Muriuki Muriithi
2025-05-19
Add "Publication" table to locked tables.
Frederick Muriuki Muriithi
2025-05-19
Bug: Connection objects do not have execute() function.
Frederick Muriuki Muriithi
2025-05-19
Handle case where the given publication_id does not exist.
Frederick Muriuki Muriithi
2025-05-19
Fix generic bugs
Frederick Muriuki Muriithi
2025-05-19
Import missing symbols.
Frederick Muriuki Muriithi
2025-05-19
Provide extra metadata to the job.
Frederick Muriuki Muriithi
2025-05-19
Provide missing URI to the MariaDB database to the script.
Frederick Muriuki Muriithi
2025-05-19
Cross-reference phenotypes, publications, and data.
Frederick Muriuki Muriithi
2025-05-19
Retrieve publication first.
Frederick Muriuki Muriithi
2025-05-19
Simplify handling of publications: Assume a maximum of one.
Frederick Muriuki Muriithi
2025-05-19
Add placeholder stub to be implemented later.
Frederick Muriuki Muriithi
2025-05-19
Add some notes for later.
Frederick Muriuki Muriithi
2025-05-19
Save numeric/computational data for phenotypes.
Frederick Muriuki Muriithi
2025-05-19
Retrieve samples' details from the database.
Frederick Muriuki Muriithi
2025-05-19
Add function to save the numerical data for phenotypes.
Frederick Muriuki Muriithi
2025-05-19
Use correct files for basic phenotypes data. Add notes to self.
Frederick Muriuki Muriithi
2025-05-19
Rework order of execution of potential steps.
Frederick Muriuki Muriithi
2025-05-19
Cleanup function call.
Frederick Muriuki Muriithi
2025-05-19
Fetch next available PublishXRef.DataId value for the phenotypes.
Frederick Muriuki Muriithi
2025-05-19
Save the basic phenotypes data into the database.
Frederick Muriuki Muriithi
2025-05-19
Read headers from a CSV file, whether transposed or not.
Frederick Muriuki Muriithi
2025-05-19
Pass Connection rather than Cursor: Transaction is maintained.
Frederick Muriuki Muriithi
2025-05-19
Initialise function to save publications
Frederick Muriuki Muriithi
2025-05-19
Setup log format for the application.
Frederick Muriuki Muriithi
2025-05-12
Wireframe saving the data into the database.
Frederick Muriuki Muriithi
2025-05-12
Print out progress to STDOUT.
Frederick Muriuki Muriithi
2025-05-12
Use builtin functions to compute log level.
Frederick Muriuki Muriithi
2025-05-12
Pass in the logger, rather than the name of the logger.
Frederick Muriuki Muriithi
2025-05-12
Handle exceptions within the `with` to prevent silent failure
Frederick Muriuki Muriithi
2025-05-12
Break "merge file" race-condition
Frederick Muriuki Muriithi
2025-05-12
Allow lowercase versions of the log-level choices.
Frederick Muriuki Muriithi
2025-05-12
BugFix: Don't scroll to top of page on clicking "Browse" buttons.
Frederick Muriuki Muriithi
2025-05-09
Use more of the screen width for content on smaller screens.
Frederick Muriuki Muriithi
2025-05-05
Init setup and script for async job to load phenotypes into database
Frederick Muriuki Muriithi
2025-05-05
Save/Create new phenotypes in the database.
Frederick Muriuki Muriithi
2025-05-05
Provide endpoint for loading data after QC is successful.
Frederick Muriuki Muriithi
2025-05-05
Require that the publication is present.
Frederick Muriuki Muriithi
2025-05-05
Move previews below each item rather than being in the sidebar.
Frederick Muriuki Muriithi
2025-05-05
Include the publication when provided.
Frederick Muriuki Muriithi
2025-05-05
Allow plain text files too.
Frederick Muriuki Muriithi
2025-05-02
Mark directories as packages to make modules unique.
Frederick Muriuki Muriithi
2025-05-02
PoC: Use independent module-level loggers with application
Frederick Muriuki Muriithi
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