| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 5 days | Delete unused function. HEAD main | Frederick Muriuki Muriithi | |
| 5 days | Fix issues caught by type-checker. | Frederick Muriuki Muriithi | |
| 7 days | Move phenotypes dataset UI to its own template. | Frederick Muriuki Muriithi | |
| 7 days | Fix linting problems. | Frederick Muriuki Muriithi | |
| 8 days | Move logic for loading streamlined-UI templates to reusable function | Frederick Muriuki Muriithi | |
| 8 days | Add "Streamlined UI" templates for phenotype upload sub-features. | Frederick Muriuki Muriithi | |
| 8 days | Implement streamlined UI for phenotypes upload page. | Frederick Muriuki Muriithi | |
| 8 days | Redirect to "View Populations" page | Frederick Muriuki Muriithi | |
| While the streamlined UI is under construction, redirect the request back to the "View Population" page for the time being, until the UI requirements have been figured out. | |||
| 2025-12-10 | Feature Flags: Generically deal with HTTP-based feature flags. | Frederick Muriuki Muriithi | |
| * Define a default `FEATURE_FLAGS_HTTP` configuration variable that's an empty list to help defining http-based feature flags that can be used to turn on/off features * Build macro to include hidden fields for feature flags where necessary. * Extend flask's `url_for` function to deal with defined feature flags in a mostly transparent way | |||
| 2025-12-03 | Rerun QTLReaper script with provided details. | Frederick Muriuki Muriithi | |
| 2025-11-19 | Add function to retrieve vector data for phenotypes from the db. | Frederick Muriuki Muriithi | |
| 2025-11-05 | Fix issues caught by linter. | Frederick Muriuki Muriithi | |
| 2025-11-05 | Add success handler for recompute phenotypes means jobs. | Frederick Muriuki Muriithi | |
| 2025-11-05 | Enable (re)compute of phenotype means by users. | Frederick Muriuki Muriithi | |
| 2025-11-03 | Use new "redirection-to-next" utilities. | Frederick Muriuki Muriithi | |
| 2025-11-03 | Improve UI to enable editing publication details. | Frederick Muriuki Muriithi | |
| 2025-10-13 | Fix linting errors. | Frederick Muriuki Muriithi | |
| 2025-08-25 | Create and cross-reference phenotypes | Frederick Muriuki Muriithi | |
| Update `create_new_phenotypes` function to create the phenotypes and cross-reference them to their populations, publications, and groups in one transaction to ensure consistency. | |||
| 2025-08-25 | Preprocess phenotype data and return normalised form. | Frederick Muriuki Muriithi | |
| 2025-07-14 | Deactivate linter error check. | Frederick Muriuki Muriithi | |
| 2025-07-14 | Remove comments and demo statements. | Frederick Muriuki Muriithi | |
| 2025-07-14 | Fix linting issues. | Frederick Muriuki Muriithi | |
| 2025-07-14 | Fix imports | Frederick Muriuki Muriithi | |
| Remove unused imports, update old imports to newer forms and add missing imports. | |||
| 2025-07-14 | Refactor out common functionality into separate function. | Frederick Muriuki Muriithi | |
| 2025-07-14 | Do not enter IDs in files in the description field. | Frederick Muriuki Muriithi | |
| 2025-07-02 | Update descriptions and abbreviations | Frederick Muriuki Muriithi | |
| - Add the description to both the Original and Post-Publication fields. - Set the abbreviation fields to the identifier in the files. | |||
| 2025-07-01 | Bugfix: The value needs to be a tuple or list. | Frederick Muriuki Muriithi | |
| 2025-07-01 | Ignore any optional files that are not provided. | Frederick Muriuki Muriithi | |
| 2025-07-01 | Remove unused feature | Frederick Muriuki Muriithi | |
| The feature is implemented elsewhere (GN2) in a better way. | |||
| 2025-06-30 | Allow independent transposition of each file | Frederick Muriuki Muriithi | |
| * Rework UI to provide independent selection of whether or not each file is transposed * Update the backend code to individually set the transposition status for each file independently. | |||
| 2025-06-26 | Narrow search to only uploaded traits. | Frederick Muriuki Muriithi | |
| 2025-06-24 | Use positional parameters rather than named ones. | Frederick Muriuki Muriithi | |
| Named parameters were causing problems on staging, where the names would be converted into bytestrings and then used to index into the dictionaries, leading to `KeyError` exceptions. | |||
| 2025-06-24 | Use pathlib.Path object for file paths. | Frederick Muriuki Muriithi | |
| 2025-06-17 | Allow users to provide transposed files. | Frederick Muriuki Muriithi | |
| 2025-06-10 | Display the success page. | Frederick Muriuki Muriithi | |
| 2025-06-10 | Pass on the publication to the next job. | Frederick Muriuki Muriithi | |
| 2025-06-10 | Bug: Fix logging. | Frederick Muriuki Muriithi | |
| 2025-06-10 | Provide handler for `load-new-phenotypes-data` jobs. | Frederick Muriuki Muriithi | |
| 2025-06-10 | On success, redirect to job status check page. | Frederick Muriuki Muriithi | |
| 2025-06-10 | Display the error. | Frederick Muriuki Muriithi | |
| 2025-06-10 | Set loglevel for background job's launcher. | Frederick Muriuki Muriithi | |
| 2025-06-05 | Request token for use with script to update authorisations | Frederick Muriuki Muriithi | |
| After the script has completed loading the data into the database, the user who uploads the data will need to access the data they've uploaded. This commit requests a new token to use with the script for updating the authorisations as appropriate, to grant the user access to their data. | |||
| 2025-06-03 | Save data with `LOAD DATA INFILE …` query | Frederick Muriuki Muriithi | |
| To help speed up the saving of the data (for really huge files) into the database, use the `LOAD DATA INFILE …` command if available, and if not fallback to the one using raw queries. | |||
| 2025-06-03 | Increase number of rows per query. | Frederick Muriuki Muriithi | |
| 2025-06-03 | Debug the query: useful to figure out what's happening. | Frederick Muriuki Muriithi | |
| 2025-06-03 | Memory saving: Don't reload saved data | Frederick Muriuki Muriithi | |
| We already have all the data in memory, so we do not need to reload it and keep yet another copy. | |||
| 2025-06-02 | Add some debugging statements. | Frederick Muriuki Muriithi | |
| 2025-06-02 | Parametrize the "DataId" column for different tables. | Frederick Muriuki Muriithi | |
| 2025-06-02 | Explicitly query for newly entered data. | Frederick Muriuki Muriithi | |
| The `cursor.executemany()` call only returned the last row that was inserted, rather than ALL the rows. This is not the correct thing to do, therefore, this commit fixes that by explicitly querying for all the newly entered data. | |||
| 2025-05-30 | Add dataset_id and bundle path to job metadata. | Frederick Muriuki Muriithi | |
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index : gn-uploader | |
| gn-uploader: Data uploader for GeneNetwork |
| about summary refs log tree commit diff |