aboutsummaryrefslogtreecommitdiff
path: root/scripts
AgeCommit message (Expand)Author
2024-08-13Bug: cross reference with NULL cM when "gmap" file is absentFrederick Muriuki Muriithi
2024-08-12Rename module: Module contains exceptions classes.Frederick Muriuki Muriithi
2024-08-08Fix bugs and pass in logger to functions.Frederick Muriuki Muriithi
2024-08-06Pass logger on to inner functionsFrederick Muriuki Muriithi
2024-07-25Fix typing and linting errors.Frederick Muriuki Muriithi
2024-07-25Rename module: qc_app --> uploaderFrederick Muriuki Muriithi
2024-07-05bug: Return a hashable key, not a dict.Frederick Muriuki Muriithi
2024-07-02Call correct method.Frederick Muriuki Muriithi
2024-07-02Ensure no duplicated values for the query.Frederick Muriuki Muriithi
2024-07-01Check for genotype samples in the databaseFrederick Muriuki Muriithi
2024-06-27Fix bug with the logging setup.Frederick Muriuki Muriithi
2024-04-12Move entry-point module to scripts package.Frederick Muriuki Muriithi
2024-04-08Fix pylint and mypy errors.Frederick Muriuki Muriithi
2024-04-04Remove unused database connection.Frederick Muriuki Muriithi
2024-04-03Reduce size of data inserted per queryFrederick Muriuki Muriithi
2024-03-29Quiet linter.Frederick Muriuki Muriithi
2024-03-22Notify user if identifiers are not consistent.Frederick Muriuki Muriithi
2024-03-22Map names in files to names in database.Frederick Muriuki Muriithi
2024-03-22Fix linting issue.Frederick Muriuki Muriithi
2024-03-20Fix bug: correctly merge standard-error values in file to data in dbFrederick Muriuki Muriithi
2024-02-28Fix bug: fetch from cursor, not return from cursor.execute(…)load-raw-data-no-parsingFrederick Muriuki Muriithi
2024-02-21Check that samples/cases are consistentFrederick Muriuki Muriithi
2024-02-21Pass 'filename' value to error checker function.Frederick Muriuki Muriithi
2024-02-20Track filename in the errorsFrederick Muriuki Muriithi
2024-02-15Filter out NULL valuesFrederick Muriuki Muriithi
2024-02-15Only log out information if the check is actually run.Frederick Muriuki Muriithi
2024-02-13Add some parallelism to the QC ChecksFrederick Muriuki Muriithi
2024-02-13Provide nice UI progress indicators.Frederick Muriuki Muriithi
2024-02-12Check for errors in the 'phenose' file.Frederick Muriuki Muriithi
2024-02-12Check for errors in the 'pheno' file.Frederick Muriuki Muriithi
2024-02-12Collect and display errors on 'geno' files in the bundle.Frederick Muriuki Muriithi
2024-02-12Add scaffolding for running individual files' QC checksFrederick Muriuki Muriithi
2024-02-12Extract missing files check to external functionFrederick Muriuki Muriithi
2024-02-12Retrive and display generic bundle errorsFrederick Muriuki Muriithi
2024-02-12R/qtl2 QC: Set up scaffolding for QC UIFrederick Muriuki Muriithi
2024-02-12Provide better error messagingFrederick Muriuki Muriithi
2024-02-05Run QC on the 'geno' file in R/qtl2 bundle.Frederick Muriuki Muriithi
2024-02-05Add a QC step: Check all listed files existFrederick Muriuki Muriithi
2024-02-05Fix linting and type errors.Frederick Muriuki Muriithi
2024-01-24Checks: Update code and tests to ensure all checks pass.Frederick Muriuki Muriithi
2024-01-24redis-prefix: Update file validation codeFrederick Muriuki Muriithi
2024-01-23Update scripts to use redis prefix.Frederick Muriuki Muriithi
2024-01-22scripts: Pass in logger to get detailed updates.Frederick Muriuki Muriithi
2024-01-22UI: Show progress of R/qtl2 bundle processing.Frederick Muriuki Muriithi
2024-01-20Fetch sample/case names from databaseFrederick Muriuki Muriithi
2024-01-19scripts: Process R/qtl2 bundleFrederick Muriuki Muriithi
2024-01-16Filter out items with values of `None`.Frederick Muriuki Muriithi
2024-01-15Update imports: `take` was moved to different package.Frederick Muriuki Muriithi
2024-01-15Process the `pheno` files.Frederick Muriuki Muriithi
2024-01-15Initialise `install_phenos` script.Frederick Muriuki Muriithi
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-09 06:41:08 +0000