| Age | Commit message (Expand) | Author |
|---|---|---|
| 2024-08-16 | Log out correct parameters. | Frederick Muriuki Muriithi |
| 2024-08-13 | Bug: cross reference with NULL cM when "gmap" file is absent...The "gmap" file might not exist in some bundles. In those instances, cross-reference the data without including the genotypes' physical positions (cM). | Frederick Muriuki Muriithi |
| 2024-08-08 | Fix bugs and pass in logger to functions. | Frederick Muriuki Muriithi |
| 2024-08-06 | Pass logger on to inner functions...Pass the logger forward to inner functions to help with debugging things. | Frederick Muriuki Muriithi |
| 2024-07-25 | Rename module: qc_app --> uploader | Frederick Muriuki Muriithi |
| 2024-07-05 | bug: Return a hashable key, not a dict. | Frederick Muriuki Muriithi |
| 2024-07-02 | Call correct method. | Frederick Muriuki Muriithi |
| 2024-07-02 | Ensure no duplicated values for the query. | Frederick Muriuki Muriithi |
| 2024-04-03 | Reduce size of data inserted per query...Reduce the size of data inserted per query since MariDB allows a packet with a maximum size of 1GB. This should hopefully resolve the …OperationalError: (2006, 'Server has gone away') error. | Frederick Muriuki Muriithi |
| 2024-02-15 | Filter out NULL values | Frederick Muriuki Muriithi |
| 2024-02-05 | Fix linting and type errors. | Frederick Muriuki Muriithi |
| 2024-01-23 | Update scripts to use redis prefix. | Frederick Muriuki Muriithi |
| 2024-01-22 | scripts: Pass in logger to get detailed updates. | Frederick Muriuki Muriithi |
| 2024-01-19 | scripts: Process R/qtl2 bundle...Build script to start the processing of the R/qtl2 bundle. | Frederick Muriuki Muriithi |
| 2024-01-16 | Filter out items with values of `None`....The ProbeSetData table does not allow `NULL` for the `value` column for good reason - if there is no value, just don't have a record for that particular sample. | Frederick Muriuki Muriithi |
| 2024-01-15 | Update imports: `take` was moved to different package. | Frederick Muriuki Muriithi |
| 2024-01-15 | Process the `pheno` files....Process the data in the pheno files and insert it into the database. | Frederick Muriuki Muriithi |
| 2024-01-15 | Initialise `install_phenos` script. | Frederick Muriuki Muriithi |
| 2024-01-15 | Extract common structure into separate modules. | Frederick Muriuki Muriithi |
| 2024-01-11 | Update pmap data in the database. | Frederick Muriuki Muriithi |
| 2024-01-11 | Update gmap data in the database...Update the genetic positions (in centiMorgans) in the database. | Frederick Muriuki Muriithi |
| 2024-01-11 | Cleanup linting and typing errors. | Frederick Muriuki Muriithi |
| 2024-01-11 | CLI: Require datasetid as an argument. | Frederick Muriuki Muriithi |
| 2024-01-10 | Provide convenience functions to avoid subtle call errors | Frederick Muriuki Muriithi |
| 2024-01-10 | Cross-reference genotype data to the dataset. | Frederick Muriuki Muriithi |
| 2024-01-10 | Insert genotype data. | Frederick Muriuki Muriithi |
| 2024-01-10 | Cross-reference individuals to populations. | Frederick Muriuki Muriithi |
| 2024-01-10 | Insert any new individuals/samples into the database. | Frederick Muriuki Muriithi |
| 2024-01-10 | Insert any new markers...Insert any new markers found into the database. | Frederick Muriuki Muriithi |
| 2024-01-09 | WIP: Install genotypes from R/qtl2 bundle...Load the genotype information from the R/qtl2 bundle and insert it into the database. | Frederick Muriuki Muriithi |
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index : gn-uploader | |
| gn-uploader: Data uploader for GeneNetwork |
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