Age | Commit message (Expand) | Author |
2025-01-23 | Ensure names are lowercase for comparison purposes. | Frederick Muriuki Muriithi |
2024-12-03 | Fix some linting and mypy issues. | Frederick Muriuki Muriithi |
2024-12-03 | Improve error text | Frederick Muriuki Muriithi |
2024-12-03 | Update file metadata using a mapping | Frederick Muriuki Muriithi |
2024-12-03 | Provide consistent way to build file-specific fully-qualified keys | Frederick Muriuki Muriithi |
2024-12-03 | Save 'pheno' errors in redis as they are found. | Frederick Muriuki Muriithi |
2024-12-03 | Add some phenocovar metadata. | Frederick Muriuki Muriithi |
2024-12-03 | Save phenocovar errors in redis as they are found. | Frederick Muriuki Muriithi |
2024-12-03 | Pass the redis connection and fully qualified job id | Frederick Muriuki Muriithi |
2024-12-03 | Wrap everything in try-catch to handle errors gracefully. | Frederick Muriuki Muriithi |
2024-12-02 | Fix typo. | Frederick Muriuki Muriithi |
2024-12-02 | Send logs to STDOUT too. | Frederick Muriuki Muriithi |
2024-12-02 | Return 0 on completion of QC processing. | Frederick Muriuki Muriithi |
2024-12-02 | Change from 'pending' to 'started' on entry to script. | Frederick Muriuki Muriithi |
2024-11-22 | Use gn-libs code for db connection. | Frederick Muriuki Muriithi |
2024-10-24 | Reduce number of local variables created in function. | Frederick Muriuki Muriithi |
2024-10-24 | Add `jobid` to extraction directory | Frederick Muriuki Muriithi |
2024-10-24 | Check pheno, phenose, and phenonum files with logging | Frederick Muriuki Muriithi |
2024-10-24 | Check phenocovar files with logging | Frederick Muriuki Muriithi |
2024-10-24 | Fix linting and typing errors. | Frederick Muriuki Muriithi |
2024-10-24 | Parse entire namespace object rather than individual values. | Frederick Muriuki Muriithi |
2024-10-24 | Move logger creation to `build_main` function | Frederick Muriuki Muriithi |
2024-10-22 | Refactor `qc_pheno_file` and reuse it for different file types. | Frederick Muriuki Muriithi |
2024-10-22 | Check for errors in `pheno` files. | Frederick Muriuki Muriithi |
2024-10-21 | Check `phenocovar` files for errors. | Frederick Muriuki Muriithi |
2024-10-17 | Cleanup: Delete all extracted files after processing. | Frederick Muriuki Muriithi |
2024-10-17 | Leave TODO notes for what needs to be done. | Frederick Muriuki Muriithi |
2024-10-17 | Fetch samples from database | Frederick Muriuki Muriithi |
2024-10-17 | Undo transpose for any transposed files | Frederick Muriuki Muriithi |
2024-10-17 | Pass new arguments to QC function. | Frederick Muriuki Muriithi |
2024-10-17 | Add `speciesid` and `populationid` arguments to the script. | Frederick Muriuki Muriithi |
2024-10-17 | Add the working directory argument to the script. | Frederick Muriuki Muriithi |
2024-10-17 | Extract the R/qtl2 bundle for processing. | Frederick Muriuki Muriithi |
2024-10-17 | Extract common functions. | Frederick Muriuki Muriithi |
2024-10-14 | Initialise background script for running QC on phenotype bundles. | Frederick Muriuki Muriithi |
2024-10-14 | BugFix: Use provided prefix | Frederick Muriuki Muriithi |
2024-10-14 | Make addition of arguments independent of each other. | Frederick Muriuki Muriithi |
2024-08-16 | Log out correct parameters. | Frederick Muriuki Muriithi |
2024-08-13 | Bug: cross reference with NULL cM when "gmap" file is absent | Frederick Muriuki Muriithi |
2024-08-08 | Fix bugs and pass in logger to functions. | Frederick Muriuki Muriithi |
2024-08-06 | Pass logger on to inner functions | Frederick Muriuki Muriithi |
2024-07-25 | Rename module: qc_app --> uploader | Frederick Muriuki Muriithi |
2024-07-05 | bug: Return a hashable key, not a dict. | Frederick Muriuki Muriithi |
2024-07-02 | Call correct method. | Frederick Muriuki Muriithi |
2024-07-02 | Ensure no duplicated values for the query. | Frederick Muriuki Muriithi |
2024-04-03 | Reduce size of data inserted per query | Frederick Muriuki Muriithi |
2024-02-15 | Filter out NULL values | Frederick Muriuki Muriithi |
2024-02-05 | Fix linting and type errors. | Frederick Muriuki Muriithi |
2024-01-23 | Update scripts to use redis prefix. | Frederick Muriuki Muriithi |
2024-01-22 | scripts: Pass in logger to get detailed updates. | Frederick Muriuki Muriithi |