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gn-uploader: Data uploader for GeneNetwork
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2025-04-14
Update imports.
Frederick Muriuki Muriithi
2025-04-14
Return created objects with their IDs
Frederick Muriuki Muriithi
2025-04-14
Add types for connection objects.
Frederick Muriuki Muriithi
2025-04-14
Compute differences with tested function.
Frederick Muriuki Muriithi
2025-04-14
Implement computation for publication differences.
Frederick Muriuki Muriithi
2025-04-14
Move code to save new publications to database.
Frederick Muriuki Muriithi
2025-04-14
Rename test module.
Frederick Muriuki Muriithi
2025-04-11
Fix bug: Provide empty defaults, and fix type.
Frederick Muriuki Muriithi
2025-04-11
Move code to fetch phenotype publications from DB to publications package.
Frederick Muriuki Muriithi
2025-04-11
Move code to fetch publications from pubmed to publications module.
Frederick Muriuki Muriithi
2025-04-11
Write test for computing differences for publications in bulk edits.
Frederick Muriuki Muriithi
2025-04-11
Setup client for use with tests.
Frederick Muriuki Muriithi
2025-04-11
Update application initialisation to allow config updates for tests.
Frederick Muriuki Muriithi
2025-04-09
Convert PubMed_ID value from file to int
Frederick Muriuki Muriithi
2025-04-09
Compute publications differences.
Frederick Muriuki Muriithi
2025-04-09
Save new publications retrieved from NCBI's PubMed database.
Frederick Muriuki Muriithi
2025-04-09
Retrieve publication information from NCBI.
Frederick Muriuki Muriithi
2025-04-09
Use class from Bootstrap5 for hiding elements.
Frederick Muriuki Muriithi
2025-04-09
Fix typo.
Frederick Muriuki Muriithi
2025-04-09
Check whether there are new PubMed IDs before beginning the fetch.
Frederick Muriuki Muriithi
2025-04-05
Don't clear anonymous sessions with every check for login.
Frederick Muriuki Muriithi
2025-04-05
Add base "alert" class for alerts for bootstrap 5.
Frederick Muriuki Muriithi
2025-04-05
Fix fetching of user details.
Frederick Muriuki Muriithi
2025-04-05
Set "logged_in" key together with the token.
Frederick Muriuki Muriithi
2025-04-05
Override only the user details provided rather than the entire object.
Frederick Muriuki Muriithi
2025-03-26
Pass PubMed IDs from the file to difference computation function.
Frederick Muriuki Muriithi
2025-03-26
Add function to compute publication differences.
Frederick Muriuki Muriithi
2025-03-26
Partial implementation: Fetch publications from NCBI.
Frederick Muriuki Muriithi
2025-03-26
Fetch existing publications from the database.
Frederick Muriuki Muriithi
2025-03-26
Pass in system log-level to script.
Frederick Muriuki Muriithi
2025-03-26
Compute differences in the descriptions.
Frederick Muriuki Muriithi
2025-03-26
Replaces empty strings with None
Frederick Muriuki Muriithi
2025-03-26
Collect IDs once at the top-level call to save on iterations.
Frederick Muriuki Muriithi
2025-03-26
Provide connection URI for mariadb.
Frederick Muriuki Muriithi
2025-03-26
Update comment text.
Frederick Muriuki Muriithi
2025-03-26
Check whether the IDs are valid.
Frederick Muriuki Muriithi
2025-03-25
Add function to read the file and do basic data processing.
Frederick Muriuki Muriithi
2025-03-25
Initialise background script to handle bulk edits.
Frederick Muriuki Muriithi
2025-03-25
Run job with unbuffered outputs.
Frederick Muriuki Muriithi
2025-03-25
Update name of launcher script used.
Frederick Muriuki Muriithi
2025-03-24
Begin processing the uploadeded bulk-edit file.
Frederick Muriuki Muriithi
2025-03-24
Only allow text/tab-separated-values files to be uploaded.
Frederick Muriuki Muriithi
2025-03-24
Make name same a id.
Frederick Muriuki Muriithi
2025-03-24
Initialise jobs package for flask.
Frederick Muriuki Muriithi
2025-03-21
Add "PubMed_ID" field
Frederick Muriuki Muriithi
2025-03-21
Bulk Edit: Initialise the bulk-edit upload
Frederick Muriuki Muriithi
2025-03-21
Rename endpoint: Distinguish edit download from other downloads.
Frederick Muriuki Muriithi
2025-03-21
Add "Busy" indicator
Frederick Muriuki Muriithi
2025-03-21
Bugfix: Provide missing import.
Frederick Muriuki Muriithi
2025-03-20
Initialise session storage directory.
Frederick Muriuki Muriithi
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