gn-uploader - gn-uploader: Data uploader for GeneNetwork

Age	Commit message (Expand)	Author
11 days	Pass the redis connection and fully qualified job id	Frederick Muriuki Muriithi
11 days	Cleanup linting and type (mypy) errors.	Frederick Muriuki Muriithi
11 days	Wrap everything in try-catch to handle errors gracefully.	Frederick Muriuki Muriithi
12 days	Add emphasis to important point.	Frederick Muriuki Muriithi
12 days	Fix typo.	Frederick Muriuki Muriithi
12 days	Send logs to STDOUT too.	Frederick Muriuki Muriithi
12 days	Launch job and redirect to job status page.	Frederick Muriuki Muriithi
12 days	Add UI to view status of the job as it runs.	Frederick Muriuki Muriithi
12 days	Return 0 on completion of QC processing.	Frederick Muriuki Muriithi
12 days	Change from 'pending' to 'started' on entry to script.	Frederick Muriuki Muriithi
2024-11-22	Remove local code that does db connection.	Frederick Muriuki Muriithi
2024-11-22	Use gn-libs code for db connection.	Frederick Muriuki Muriithi
2024-11-22	Add gn-libs as a dependency.	Frederick Muriuki Muriithi
2024-10-24	Reduce number of local variables created in function.	Frederick Muriuki Muriithi
2024-10-24	Add `jobid` to extraction directory	Frederick Muriuki Muriithi
2024-10-24	Check pheno, phenose, and phenonum files with logging	Frederick Muriuki Muriithi
2024-10-24	Check phenocovar files with logging	Frederick Muriuki Muriithi
2024-10-24	Fix linting and typing errors.	Frederick Muriuki Muriithi
2024-10-24	Add a `--loglevel` argument to select loglevel in scripts	Frederick Muriuki Muriithi
2024-10-24	Parse entire namespace object rather than individual values.	Frederick Muriuki Muriithi
2024-10-24	Move logger creation to `build_main` function	Frederick Muriuki Muriithi
2024-10-24	Add handler to send log messages to specific Redis list	Frederick Muriuki Muriithi
2024-10-24	Update Redis prefix settings.	Frederick Muriuki Muriithi
2024-10-24	Don't compute settings in configuration file.	Frederick Muriuki Muriithi
2024-10-23	Add documentation on background jobs.	Frederick Muriuki Muriithi
2024-10-22	Document emergent general QC structure for CSV files.	Frederick Muriuki Muriithi
2024-10-22	Refactor `qc_pheno_file` and reuse it for different file types.	Frederick Muriuki Muriithi
2024-10-22	Check for errors in `pheno` files.	Frederick Muriuki Muriithi
2024-10-21	Check `phenocovar` files for errors.	Frederick Muriuki Muriithi
2024-10-21	Add utilities for reading text files and csv files	Frederick Muriuki Muriithi
2024-10-17	UI: Create background job when user uploads file.	Frederick Muriuki Muriithi
2024-10-17	Cleanup: Delete all extracted files after processing.	Frederick Muriuki Muriithi
2024-10-17	Leave TODO notes for what needs to be done.	Frederick Muriuki Muriithi
2024-10-17	Fetch samples from database	Frederick Muriuki Muriithi
2024-10-17	Undo transpose for any transposed files	Frederick Muriuki Muriithi
2024-10-17	Pass new arguments to QC function.	Frederick Muriuki Muriithi
2024-10-17	Add `speciesid` and `populationid` arguments to the script.	Frederick Muriuki Muriithi
2024-10-17	Add the working directory argument to the script.	Frederick Muriuki Muriithi
2024-10-17	Extract the R/qtl2 bundle for processing.	Frederick Muriuki Muriithi
2024-10-17	Extract common functions.	Frederick Muriuki Muriithi
2024-10-17	Save errors for each file in lists. Parallelise error checking.	Frederick Muriuki Muriithi
2024-10-17	Rewrite the QC code for R/qtl2	Frederick Muriuki Muriithi
2024-10-17	Ignore comment lines.	Frederick Muriuki Muriithi
2024-10-17	Implement sha256 hashing over file contents.	Frederick Muriuki Muriithi
2024-10-17	Add test for function to compute file hash.	Frederick Muriuki Muriithi
2024-10-17	Rename test module.	Frederick Muriuki Muriithi
2024-10-17	mypy: Fix some typing issues.	Frederick Muriuki Muriithi
2024-10-14	Initialise background script for running QC on phenotype bundles.	Frederick Muriuki Muriithi
2024-10-14	Update typing information.	Frederick Muriuki Muriithi
2024-10-14	BugFix: Use provided prefix	Frederick Muriuki Muriithi