| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 10 days | Compute differences with tested function. | Frederick Muriuki Muriithi | |
| 10 days | Implement computation for publication differences. | Frederick Muriuki Muriithi | |
| 10 days | Move code to save new publications to database. | Frederick Muriuki Muriithi | |
| 10 days | Rename test module. | Frederick Muriuki Muriithi | |
| 12 days | Fix bug: Provide empty defaults, and fix type. | Frederick Muriuki Muriithi | |
| 13 days | Move code to fetch phenotype publications from DB to publications package. | Frederick Muriuki Muriithi | |
| 13 days | Move code to fetch publications from pubmed to publications module. | Frederick Muriuki Muriithi | |
| 13 days | Write test for computing differences for publications in bulk edits. | Frederick Muriuki Muriithi | |
| 13 days | Setup client for use with tests. | Frederick Muriuki Muriithi | |
| 13 days | Update application initialisation to allow config updates for tests. | Frederick Muriuki Muriithi | |
| 2025-04-09 | Convert PubMed_ID value from file to int | Frederick Muriuki Muriithi | |
| 2025-04-09 | Compute publications differences. | Frederick Muriuki Muriithi | |
| 2025-04-09 | Save new publications retrieved from NCBI's PubMed database. | Frederick Muriuki Muriithi | |
| 2025-04-09 | Retrieve publication information from NCBI. | Frederick Muriuki Muriithi | |
| 2025-04-09 | Use class from Bootstrap5 for hiding elements. | Frederick Muriuki Muriithi | |
| 2025-04-09 | Fix typo. | Frederick Muriuki Muriithi | |
| 2025-04-09 | Check whether there are new PubMed IDs before beginning the fetch. | Frederick Muriuki Muriithi | |
| 2025-04-05 | Don't clear anonymous sessions with every check for login. | Frederick Muriuki Muriithi | |
| 2025-04-05 | Add base "alert" class for alerts for bootstrap 5. | Frederick Muriuki Muriithi | |
| 2025-04-05 | Fix fetching of user details. | Frederick Muriuki Muriithi | |
| Move the fetching of user details to the client module. Add checks to only fetch the details if they are not updated yet. | |||
| 2025-04-05 | Set "logged_in" key together with the token. | Frederick Muriuki Muriithi | |
| 2025-04-05 | Override only the user details provided rather than the entire object. | Frederick Muriuki Muriithi | |
| 2025-03-26 | Pass PubMed IDs from the file to difference computation function. | Frederick Muriuki Muriithi | |
| 2025-03-26 | Add function to compute publication differences. | Frederick Muriuki Muriithi | |
| 2025-03-26 | Partial implementation: Fetch publications from NCBI. | Frederick Muriuki Muriithi | |
| 2025-03-26 | Fetch existing publications from the database. | Frederick Muriuki Muriithi | |
| 2025-03-26 | Pass in system log-level to script. | Frederick Muriuki Muriithi | |
| 2025-03-26 | Compute differences in the descriptions. | Frederick Muriuki Muriithi | |
| 2025-03-26 | Replaces empty strings with None | Frederick Muriuki Muriithi | |
| 2025-03-26 | Collect IDs once at the top-level call to save on iterations. | Frederick Muriuki Muriithi | |
| 2025-03-26 | Provide connection URI for mariadb. | Frederick Muriuki Muriithi | |
| 2025-03-26 | Update comment text. | Frederick Muriuki Muriithi | |
| 2025-03-26 | Check whether the IDs are valid. | Frederick Muriuki Muriithi | |
| 2025-03-25 | Add function to read the file and do basic data processing. | Frederick Muriuki Muriithi | |
| 2025-03-25 | Initialise background script to handle bulk edits. | Frederick Muriuki Muriithi | |
| 2025-03-25 | Run job with unbuffered outputs. | Frederick Muriuki Muriithi | |
| 2025-03-25 | Update name of launcher script used. | Frederick Muriuki Muriithi | |
| 2025-03-24 | Begin processing the uploadeded bulk-edit file. | Frederick Muriuki Muriithi | |
| 2025-03-24 | Only allow text/tab-separated-values files to be uploaded. | Frederick Muriuki Muriithi | |
| 2025-03-24 | Make name same a id. | Frederick Muriuki Muriithi | |
| 2025-03-24 | Initialise jobs package for flask. | Frederick Muriuki Muriithi | |
| 2025-03-21 | Add "PubMed_ID" field | Frederick Muriuki Muriithi | |
| The "PubMed_ID" field allows the user to edit the publication that's attached to each phenotype trait. | |||
| 2025-03-21 | Bulk Edit: Initialise the bulk-edit upload | Frederick Muriuki Muriithi | |
| * Provide UI for uploading the file * Provide (partially implemented) endpoint to handle the uploaded file. | |||
| 2025-03-21 | Rename endpoint: Distinguish edit download from other downloads. | Frederick Muriuki Muriithi | |
| 2025-03-21 | Add "Busy" indicator | Frederick Muriuki Muriithi | |
| When the user clicks "Bulk Edit (Download Data)" button, it could take a while to actually process and download the data. In that time, the visual indicator that the system is busy is helpful to the user. This commit adds the "busy" indicator. | |||
| 2025-03-21 | Bugfix: Provide missing import. | Frederick Muriuki Muriithi | |
| 2025-03-20 | Initialise session storage directory. | Frederick Muriuki Muriithi | |
| 2025-03-18 | Enable downloading of dataset's phenotype's data. | Frederick Muriuki Muriithi | |
| 2025-03-17 | Include InbredSetId: Useful for querying data. | Frederick Muriuki Muriithi | |
| 2025-03-17 | Add UI for bulk edit of data. | Frederick Muriuki Muriithi | |
 |
index : gn-uploader | |
| gn-uploader: Data uploader for GeneNetwork |
| aboutsummaryrefslogtreecommitdiff |