| Age | Commit message (Expand) | Author |
|---|---|---|
| 2024-10-17 | Pass new arguments to QC function. | Frederick Muriuki Muriithi |
| 2024-10-17 | Add `speciesid` and `populationid` arguments to the script. | Frederick Muriuki Muriithi |
| 2024-10-17 | Add the working directory argument to the script....Add a `--working-dir` argument to allow passing a directory where the script process the files within. If not provided, it defaults to a directory within the systems temporary directory. | Frederick Muriuki Muriithi |
| 2024-10-17 | Extract the R/qtl2 bundle for processing....To enable processing of the files individually, this commit will enable the extraction of the files into a known working directory in which all further processing will take place. | Frederick Muriuki Muriithi |
| 2024-10-17 | Extract common functions. | Frederick Muriuki Muriithi |
| 2024-10-17 | Save errors for each file in lists. Parallelise error checking....* Save the errors for each file in a redis list for that file. * Make error checking parallel, i.e. ensure every file of a particular type is checked completely independent of other files of the same type. | Frederick Muriuki Muriithi |
| 2024-10-17 | Rewrite the QC code for R/qtl2 | Frederick Muriuki Muriithi |
| 2024-10-17 | Ignore comment lines. | Frederick Muriuki Muriithi |
| 2024-10-17 | Implement sha256 hashing over file contents. | Frederick Muriuki Muriithi |
| 2024-10-17 | Add test for function to compute file hash. | Frederick Muriuki Muriithi |
| 2024-10-17 | Rename test module. | Frederick Muriuki Muriithi |
| 2024-10-17 | mypy: Fix some typing issues. | Frederick Muriuki Muriithi |
| 2024-10-14 | Initialise background script for running QC on phenotype bundles. | Frederick Muriuki Muriithi |
| 2024-10-14 | Update typing information. | Frederick Muriuki Muriithi |
| 2024-10-14 | BugFix: Use provided prefix...Use the provided prefix rather than calling `jobs.jobsnamespace()` function that depends of an app context existing. | Frederick Muriuki Muriithi |
| 2024-10-14 | Make addition of arguments independent of each other. | Frederick Muriuki Muriithi |
| 2024-10-14 | Improve error messages for R/qtl2 code. | Frederick Muriuki Muriithi |
| 2024-10-14 | Improve UI copy: Add list of files used. | Frederick Muriuki Muriithi |
| 2024-10-14 | Improve layout and styling of sidebar content | Frederick Muriuki Muriithi |
| 2024-10-10 | UI hints: Help user in choosing the appropriate option. | Frederick Muriuki Muriithi |
| 2024-10-10 | Build UI to add new phenotypes....Build the UI and set up styling. This is not working currently. | Frederick Muriuki Muriithi |
| 2024-10-10 | Limit the length of the population description | Frederick Muriuki Muriithi |
| 2024-10-07 | Handle "No linked resource" error cleanly....Display the page even if there is no linked resource, but keep the sensitive information hidden in such cases. | Frederick Muriuki Muriithi |
| 2024-10-07 | Add phenotype units to UI | Frederick Muriuki Muriithi |
| 2024-10-07 | Reuse requests checks to fix "too many returns" linting error | Frederick Muriuki Muriithi |
| 2024-10-07 | linting: Fix minor linting issues. | Frederick Muriuki Muriithi |
| 2024-10-07 | Create new phenotype dataset (PublishFreeze)....Provide the UI and code to create a new phenotype dataset. | Frederick Muriuki Muriithi |
| 2024-10-07 | Extract reusable input validation code. | Frederick Muriuki Muriithi |
| 2024-10-07 | Generalise pagination and paginate phenotypes...Generalise the code generating table pagination UI, and use it to paginate the list of phenotypes. | Frederick Muriuki Muriithi |
| 2024-10-02 | Add missing __init__.py | Frederick Muriuki Muriithi |
| 2024-10-01 | Add UI elements for possible extra functionality. | Frederick Muriuki Muriithi |
| 2024-10-01 | Extract privileges and use them for access control | Frederick Muriuki Muriithi |
| 2024-09-30 | BugFix: Ensure all data items show up. | Frederick Muriuki Muriithi |
| 2024-09-30 | Initialise views for a specific phenotype...Each phenotype is independent, of all others, and they are only put into datasets mostly for easy coralling of phenotypes related to a specific populations. As such, the system will probably need to provide a way to view (and possibly edit) each phenotype independent of all the others. This also fits in with the auth. | Frederick Muriuki Muriithi |
| 2024-09-30 | Extract common check into decorator for reusability. | Frederick Muriuki Muriithi |
| 2024-09-27 | Remove unused placeholders for now. | Frederick Muriuki Muriithi |
| 2024-09-27 | Improve query for fetching a phenotype dataset's data | Frederick Muriuki Muriithi |
| 2024-09-27 | Show some details for a phenotype dataset. | Frederick Muriuki Muriithi |
| 2024-09-27 | Extract common functionality into reusable function. | Frederick Muriuki Muriithi |
| 2024-09-26 | Start building up the view dataset endpoint | Frederick Muriuki Muriithi |
| 2024-09-26 | List the phenotype datasets. | Frederick Muriuki Muriithi |
| 2024-09-26 | Enable selecting population for phenotypes. | Frederick Muriuki Muriithi |
| 2024-09-26 | Initialise the phenotypes section. | Frederick Muriuki Muriithi |
| 2024-09-26 | Send the dataset ID. Fix bugs. | Frederick Muriuki Muriithi |
| 2024-09-25 | Setup auth with dataset creation. | Frederick Muriuki Muriithi |
| 2024-09-25 | Fix typos. | Frederick Muriuki Muriithi |
| 2024-09-25 | Lint: Fix myriad of linting issues | Frederick Muriuki Muriithi |
| 2024-09-25 | Provide missing database connection. | Frederick Muriuki Muriithi |
| 2024-09-25 | Create new genotype datasets. | Frederick Muriuki Muriithi |
| 2024-09-25 | PoC: Common checks in decorators work. | Frederick Muriuki Muriithi |
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index : gn-uploader | |
| gn-uploader: Data uploader for GeneNetwork |
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