| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 5 days | Fix entry/selection of population families.HEADmain | Frederick Muriuki Muriithi | |
| Populations can be grouped into families for presentation in the menus. They can also be left ungrouped. These "families" are general categories of data, whose only effect is to present the selection of the populations from the menus in a more organised form. The families can also differ from species to species, though there are some very general categories that span multiple (all?) species. This commit takes all the above into consideration, relaxing the entry constraints and making entry of the families a lot more flexible. | |||
| 11 days | Compute the means while doing the cross-refences. | Frederick Muriuki Muriithi | |
| 11 days | Update descriptions and abbreviations | Frederick Muriuki Muriithi | |
| - Add the description to both the Original and Post-Publication fields. - Set the abbreviation fields to the identifier in the files. | |||
| 11 days | Allow upload of CSV or TSV files ending with the '.txt' extension. | Frederick Muriuki Muriithi | |
| 12 days | Bugfix: The value needs to be a tuple or list. | Frederick Muriuki Muriithi | |
| 12 days | Ignore any optional files that are not provided. | Frederick Muriuki Muriithi | |
| 12 days | Remove misplaced UI elements: Publications are handled elsewhere. | Frederick Muriuki Muriithi | |
| 12 days | Remove unused feature | Frederick Muriuki Muriithi | |
| The feature is implemented elsewhere (GN2) in a better way. | |||
| 12 days | Enable scrolling and paging for both species and populations. | Frederick Muriuki Muriithi | |
| 12 days | Fix publications UI. | Frederick Muriuki Muriithi | |
| 13 days | Allow independent transposition of each file | Frederick Muriuki Muriithi | |
| * Rework UI to provide independent selection of whether or not each file is transposed * Update the backend code to individually set the transposition status for each file independently. | |||
| 2025-06-26 | Narrow search to only uploaded traits. | Frederick Muriuki Muriithi | |
| 2025-06-26 | Add cross-reference IDs to job as metadata. | Frederick Muriuki Muriithi | |
| 2025-06-26 | BugFix: Logical bug - files have already been "untransposed". | Frederick Muriuki Muriithi | |
| The `read_csv_file_headers` function can read headings from non-transposed or transposed file, depending on the value of a flag. The bug was passing the value of the `*_transposed` flag from the control file, even after any transposed files have been "untransposed". This commit passes an explicit `False` value, and adds a comment to note the fix. | |||
| 2025-06-26 | Convert to tuple to allow indexing. | Frederick Muriuki Muriithi | |
| 2025-06-26 | Replace first field header with standard "id" header. | Frederick Muriuki Muriithi | |
| 2025-06-26 | Pass in the field separator, and comment char while reading file | Frederick Muriuki Muriithi | |
| Pass in the field separator character to split the fields correctly. Also pass in the comment character to safely ignore any comment lines. | |||
| 2025-06-25 | Collapse the DataTables' viewport if there's less data. | Frederick Muriuki Muriithi | |
| 2025-06-24 | Use positional parameters rather than named ones. | Frederick Muriuki Muriithi | |
| Named parameters were causing problems on staging, where the names would be converted into bytestrings and then used to index into the dictionaries, leading to `KeyError` exceptions. | |||
| 2025-06-24 | Add notification for users that data is not saved yet. | Frederick Muriuki Muriithi | |
| 2025-06-24 | Use pathlib.Path object for file paths. | Frederick Muriuki Muriithi | |
| 2025-06-17 | Allow users to provide transposed files. | Frederick Muriuki Muriithi | |
| 2025-06-17 | Fix documentation: The rows and columns were interchanged in docs. | Frederick Muriuki Muriithi | |
| 2025-06-12 | Allow a publication to *NOT* have a PubMed ID. | Frederick Muriuki Muriithi | |
| 2025-06-12 | Create a visual separation of fields. | Frederick Muriuki Muriithi | |
| 2025-06-12 | Improve publication fetching for datatables. | Frederick Muriuki Muriithi | |
| 2025-06-12 | Improve logger setup. | Frederick Muriuki Muriithi | |
| 2025-06-11 | Limit returned results | Frederick Muriuki Muriithi | |
| Limit the number of results returned to make page more responsive. This is buggy at this point — it doesn't do exactly what I expect, e.g. when I attempt to scroll, or use pagination, it doesn't actually display all the pages as expected. | |||
| 2025-06-11 | Enable server-side searching. | Frederick Muriuki Muriithi | |
| 2025-06-11 | Specify searchable columns. | Frederick Muriuki Muriithi | |
| 2025-06-11 | Fix failing test. | Frederick Muriuki Muriithi | |
| 2025-06-11 | Fix issues caught by linter. | Frederick Muriuki Muriithi | |
| 2025-06-10 | Display the success page. | Frederick Muriuki Muriithi | |
| 2025-06-10 | Bug: The Phenotype datasets need the InbredSet.Name as a prefix | Frederick Muriuki Muriithi | |
| The Phenotype datasets need the InbredSet.Name, (not the InbredSet.InbredSetCode) as a prefix for the data to be found and listed in the GeneNetwork menu. | |||
| 2025-06-10 | Pass on the publication to the next job. | Frederick Muriuki Muriithi | |
| 2025-06-10 | Bug: Fix logging. | Frederick Muriuki Muriithi | |
| 2025-06-10 | Cleanup UI detritus. | Frederick Muriuki Muriithi | |
| 2025-06-10 | Provide handler for `load-new-phenotypes-data` jobs. | Frederick Muriuki Muriithi | |
| 2025-06-10 | Provide generalised success and error handling for the jobs. | Frederick Muriuki Muriithi | |
| 2025-06-10 | On success, redirect to job status check page. | Frederick Muriuki Muriithi | |
| 2025-06-10 | Display the error. | Frederick Muriuki Muriithi | |
| 2025-06-10 | Set loglevel for background job's launcher. | Frederick Muriuki Muriithi | |
| 2025-06-10 | Change message level. | Frederick Muriuki Muriithi | |
| 2025-06-09 | Fix minor bug. | Frederick Muriuki Muriithi | |
| 2025-06-09 | Run the authorisation update requests. | Frederick Muriuki Muriithi | |
| 2025-06-09 | Compute the data_link_ids from the request results. | Frederick Muriuki Muriithi | |
| 2025-06-09 | Fix bug in data for creating a new resource. | Frederick Muriuki Muriithi | |
| 2025-06-09 | Compute request data for …/data/link/phenotypes endpoint. | Frederick Muriuki Muriithi | |
| 2025-06-09 | Add debug logging to track process. | Frederick Muriuki Muriithi | |
| 2025-06-09 | Fix return: Don't use `RETURNING *`. | Frederick Muriuki Muriithi | |
| Fetching the results of the insert query with `RETURNING *` does not work as expected with MySQLdb. This commit, thus, returns the explicitly computed values instead. | |||
 |
index : gn-uploader | |
| gn-uploader: Data uploader for GeneNetwork |
| aboutsummaryrefslogtreecommitdiff |