diff options
Diffstat (limited to 'uploader/templates/populations/sui-view-population.html')
| -rw-r--r-- | uploader/templates/populations/sui-view-population.html | 156 |
1 files changed, 8 insertions, 148 deletions
diff --git a/uploader/templates/populations/sui-view-population.html b/uploader/templates/populations/sui-view-population.html index 6244f4d..a35eac6 100644 --- a/uploader/templates/populations/sui-view-population.html +++ b/uploader/templates/populations/sui-view-population.html @@ -73,76 +73,21 @@ role="tabpanel" aria-labelledby="phenotypes-content-tab"> - <div class="row" style="margin-top: 0.3em;"> - <div class="col"> - <a href="{{url_for('species.populations.phenotypes.add_phenotypes', - species_id=species.SpeciesId, - population_id=population.Id, - dataset_id=dataset.Id)}}" - title="Upload phenotype data for population '{{population['Name']}}'" - class="btn btn-primary">Upload new Phenotypes</a> - </div> - <div class="col"> - <a href="#" - title="List all existing publications for this population." - class="btn btn-primary not-implemented">view publications</a> - <!-- Maybe, actually filter publications by population? --> - <!-- Provide other features for publications on loaded page. --> - </div> - </div> - <div class="row" style="margin-top: 1em;"> <h3> Phenotypes in Population "{{population.FullName}} ({{population.Name}})"</h3> - <p>The table below lists the phenotypes that already exist for - population "<em>{{population.FullName}} ({{population.Name}})</em>" of - species "<em>{{species.FullName}} ({{species.Name}})</em>".</p> + <p>To view existing phenotype traits, or upload new ones, click the button below:</p> - <div class="row phenotypes-list-actions"> - <div class="col"> - <form id="frm-recompute-phenotype-means" - method="POST" - action="{{url_for( - 'species.populations.phenotypes.recompute_means', - species_id=species['SpeciesId'], - population_id=population['Id'], - dataset_id=dataset['Id'])}}"> - <input id="submit-frm-recompute-phenotype-means" - class="btn btn-info" - type="submit" - title="Compute/Recompute the means for selected phenotypes (or all phenotypes if none selected)." - value="(Rec/C)ompute means" /> - </form> - </div> + <div class="row"> <div class="col"> - <form id="frm-rerun-qtlreaper" - method="POST" - action="{{url_for( - 'species.populations.phenotypes.rerun_qtlreaper', - species_id=species['SpeciesId'], - population_id=population['Id'], - dataset_id=dataset['Id'])}}"> - <input id="submit-frm-rerun-qtlreaper" - class="btn btn-info" - type="submit" - title="Run/Rerun QTLReaper for selected phenotypes (or all phenotypes if none selected)." - value="(rer/r)un QTLReaper" /> - </form> + <a href="{{url_for( + 'species.populations.phenotypes.list_datasets', + species_id=species.SpeciesId, + population_id=population.Id)}}" + title="View and upload phenotype traits" + class="btn btn-primary">Phenotypes</a> </div> </div> - - <table id="tbl-phenotypes-list" class="table compact stripe cell-border"> - <thead> - <tr> - <th></th> - <th>Index</th> - <th>Record</th> - <th>Description</th> - </tr> - </thead> - - <tbody></tbody> - </table> </div> </div> @@ -179,89 +124,4 @@ {%block javascript%} -<script type="text/javascript" src="/static/js/urls.js"></script> - -<script type="text/javascript"> - $(function() { - /** JS to build list of phenotypes table. **/ - var species_id = {{species.SpeciesId}}; - var population_id = {{population.Id}}; - var dataset_id = {{dataset.Id}}; - var dataset_name = "{{dataset.Name}}"; - var data = {{phenotypes | tojson}}; - - var dtPhenotypesList = buildDataTable( - "#tbl-phenotypes-list", - data, - [ - { - data: function(pheno) { - return `<input type="checkbox" name="selected-phenotypes" ` - + `id="chk-selected-phenotypes-${pheno.InbredSetCode}_${pheno.xref_id}" ` - + `value="${pheno.InbredSetCode}_${pheno.xref_id}" ` - + `class="chk-row-select" />` - } - }, - {data: "sequence_number"}, - { - data: function(pheno, type, set, meta) { - var spcs_id = {{species.SpeciesId}}; - var pop_id = {{population.Id}}; - var dtst_id = {{dataset.Id}}; - var url = buildURLFromCurrentURL( - (`/species/${spcs_id}` + - `/populations/${pop_id}` + - `/phenotypes/datasets/${dtst_id}` + - `/phenotype/${pheno.xref_id}`)); - return `<a href="${url.toString()}" target="_blank">` + - `${pheno.InbredSetCode}_${pheno.xref_id}` + - `</a>`; - } - }, - { - data: function(pheno) { - return (pheno.Post_publication_description || - pheno.Original_description || - pheno.Pre_publication_description); - } - } - ], - { - select: "multi+shift", - layout: { - top1Start: { - pageLength: { - text: "Show _MENU_ of _TOTAL_" - } - }, - topStart: "info", - top1End: null - }, - rowId: function(pheno) { - return `${pheno.InbredSetCode}_${pheno.xref_id}`; - } - }); - - - $("#submit-frm-rerun-qtlreaper").on( - "click", - function(event) { - // (Re)run the QTLReaper script for selected phenotypes. - event.preventDefault(); - var form = $("#frm-rerun-qtlreaper"); - form.find(".dynamically-added-element").remove(); - dtPhenotypesList.rows({selected: true}).nodes().each((node, index) => { - _cloned = $(node).find(".chk-row-select").clone(); - _cloned.removeAttr("id"); - _cloned.removeAttr("class"); - _cloned.attr("style", "display: none;"); - _cloned.attr("data-type", "dynamically-added-element"); - _cloned.attr("class", "dynamically-added-element checkbox"); - _cloned.prop("checked", true); - form.append(_cloned); - }); - form.submit(); - }); - }); -</script> {%endblock%} |