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{%extends "populations/sui-base.html"%}
{%from "macro-step-indicator.html" import step_indicator%}
{%from "populations/macro-display-population-card.html" import display_sui_population_card%}
{%block contents%}
<div class="row">
<h2 class="heading">{{population.FullName}} ({{population.Name}})</h2>
</div>
<div class="row">
<ul class="nav nav-tabs" id="population-actions">
<li class="nav-item presentation">
<button class="nav-link"
id="samples-tab"
data-bs-toggle="tab"
data-bs-target="#samples-content"
type="button"
role="tab"
aria-controls="samples-content"
aria-selected="true">Samples</button></li>
<li class="nav-item presentation">
<button class="nav-link active"
id="phenotypes-tab"
data-bs-toggle="tab"
data-bs-target="#phenotypes-content"
type="button"
role="tab"
aria-controls="phenotypes-content"
aria-selected="false">Phenotypes</button></li>
{%if view_under_construction%}
<li class="nav-item presentation">
<button class="nav-link"
id="genotypes-tab"
data-bs-toggle="tab"
data-bs-target="#genotypes-content"
type="button"
role="tab"
aria-controls="genotypes-content"
aria-selected="false">Genotypes</button></li>
<li class="nav-item presentation">
<button class="nav-link"
id="expression-data-tab"
data-bs-toggle="tab"
data-bs-target="#expression-data-content"
type="button"
role="tab"
aria-controls="expression-data-content"
aria-selected="false">Expression-Data</button></li>
{%endif%}
</ul>
</div>
<div class="row">
<div class="tab-content" id="populations-tabs-content">
<div class="tab-pane fade"
id="samples-content"
role="tabpanel"
aria-labelledby="samples-content-tab">
<p>Think of a <strong>"sample"</strong> as say a single case or individual
in the experiment. It could even be a single strain (where applicable)
under consideration.</p>
<p>This is a convenience feature for when you want to upload phenotypes to
the system, but do not have the genotypes data ready yet.</p>
<p>Please click the button below to provide the samples that will be used
in your data.</p>
<a href="{{url_for('species.populations.samples.list_samples',
species_id=species.SpeciesId,
population_id=population.Id)}}"
title="Upload samples for population '{{population['Name']}}'"
class="btn btn-primary">Upload Samples</a>
</div>
<div class="tab-pane fade show active"
id="phenotypes-content"
role="tabpanel"
aria-labelledby="phenotypes-content-tab">
<p>Upload and manage phenotypes and publications for population
"<em>{{population.FullName}} ({{population.Name}})</em>" of species
"<em>{{species.FullName}} ({{species.Name}})</em>".</p>
<p class="text-danger">Tabs will not work nicely here. Maybe present
options e.g.:
</p>
<div class="row">
<div class="col">
<a href="{{url_for('species.populations.phenotypes.view_dataset',
species_id=species.SpeciesId,
population_id=population.Id,
dataset_id=dataset.Id)}}"
title="Upload phenotype data for population '{{population['Name']}}'"
class="btn btn-primary">Upload new Phenotypes</a>
<!-- Go straight to upload form(s). -->
</div>
<div class="col">
<a href="#"
title="List all existing phenotypes for this population."
class="btn btn-info not-implemented">list existing phenotypes</a>
<!-- Means and QTLReaper will be computed in this page. -->
</div>
<div class="col">
<a href="#"
title="List all existing publications for this population."
class="btn btn-info not-implemented">list existing publications</a>
<!-- Maybe, actually filter publications by population? -->
<!-- Provide other features for publications on loaded page. -->
</div>
</div>
</div>
<div class="tab-pane fade"
id="genotypes-content"
role="tabpanel"
aria-labelledby="genotypes-content-tab">
<p>This allows you to upload the data that concerns your genotypes.</p>
<p>Any samples/individuals/cases/strains that do not already exist in the
system will be added. This does not delete any existing data.</p>
<a href="{{url_for('species.populations.genotypes.list_genotypes',
species_id=species.SpeciesId,
population_id=population.Id)}}"
title="Upload genotype information for the '{{population.FullName}}' population of the '{{species.FullName}}' species."
class="btn btn-primary">upload genotypes</a>
</div>
<div class="tab-pane fade" id="expression-data-content" role="tabpanel" aria-labelledby="expression-data-content-tab">
<p>Upload expression data (mRNA data) for this population.</p>
<a href="#" title="" class="btn btn-primary">upload genotypes</a>
</div>
</div>
</div>
{%endblock%}
{%block sidebarcontents%}
<div class="row">
<p>Each tab presents a feature that's available at the population level.
Select the tab that allows you to continue with your task.</p>
</div>
{{display_sui_population_card(species, population)}}
{%endblock%}
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