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Diffstat (limited to 'uploader/templates/populations/rqtl2/select-probeset-study-id.html')
-rw-r--r-- | uploader/templates/populations/rqtl2/select-probeset-study-id.html | 143 |
1 files changed, 143 insertions, 0 deletions
diff --git a/uploader/templates/populations/rqtl2/select-probeset-study-id.html b/uploader/templates/populations/rqtl2/select-probeset-study-id.html new file mode 100644 index 0000000..e3fd9cc --- /dev/null +++ b/uploader/templates/populations/rqtl2/select-probeset-study-id.html @@ -0,0 +1,143 @@ +{%extends "base.html"%} +{%from "flash_messages.html" import flash_messages %} + +{%block title%}Upload R/qtl2 Bundle{%endblock%} + +{%block contents%} +<h2 class="heading">Phenotype(ProbeSet) Study</h2> + +<div class="row"> + <p>The R/qtl2 bundle you uploaded contains (a) "<strong>pheno</strong>" + file(s). This data needs to be organised under a study.</p> + <p>In this page, you can either select from a existing dataset:</p> + + <form method="POST" + action="{{url_for('expression-data.rqtl2.select_probeset_study', + species_id=species.SpeciesId, population_id=population.Id)}}" + id="frm:select-probeset-study"> + <legend class="heading">Select from existing ProbeSet studies</legend> + {{flash_messages("error-rqtl2-select-probeset-study")}} + + <input type="hidden" name="species_id" value="{{species.SpeciesId}}" /> + <input type="hidden" name="population_id" + value="{{population.InbredSetId}}" /> + <input type="hidden" name="rqtl2_bundle_file" + value="{{rqtl2_bundle_file}}" /> + <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" /> + <input type="hidden" name="tissueid" value="{{tissue.Id}}" /> + + <div> + <label for="select:probe-study" class="form-label">Study</label> + <select id="select:probe-study" + name="probe-study-id" + required="required" + aria-describedby="help-select-probeset-study" + {%if studies | length == 0%}disabled="disabled"{%endif%} + class="form-control"> + <option value="">Select a study</option> + {%for study in studies%} + <option value={{study.Id}}> + {{study.Name}} + {%if study.FullName%} + -- ({{study.FullName}}) + {%endif%} + </option> + {%endfor%} + </select> + <small id="help-select-probeset-study" class="form-text text-muted"> + Select from existing ProbeSet studies. + </small> + </div> + + <button type="submit" class="btn btn-primary">select study</button> + </form> +</div> + +<div class="row"> + <p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p> +</div> + +<div class="row"> + + <p>Create a new ProbeSet dataset below:</p> + + <form method="POST" + action="{{url_for('expression-data.rqtl2.create_probeset_study', + species_id=species.SpeciesId, population_id=population.Id)}}" + id="frm:create-probeset-study"> + <legend class="heading">Create new ProbeSet study</legend> + + {{flash_messages("error-rqtl2-create-probeset-study")}} + + <input type="hidden" name="species_id" value="{{species.SpeciesId}}" /> + <input type="hidden" name="population_id" + value="{{population.InbredSetId}}" /> + <input type="hidden" name="rqtl2_bundle_file" + value="{{rqtl2_bundle_file}}" /> + <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" /> + <input type="hidden" name="tissueid" value="{{tissue.Id}}" /> + + <div> + <label for="select:platform" class="form-label">Platform</label> + <select id="select:platform" + name="platformid" + required="required" + aria-describedby="help-select-platform" + {%if platforms | length == 0%}disabled="disabled"{%endif%} + class="form-control"> + <option value="">Select a platform</option> + {%for platform in platforms%} + <option value="{{platform.GeneChipId}}"> + {{platform.GeneChipName}} ({{platform.Name}}) + </option> + {%endfor%} + </select> + <small id="help-select-platform" class="form-text text-muted"> + Select from a list of known genomics platforms. + </small> + </div> + + <div class="form-group"> + <label for="txt:studyname" class="form-label">Study name</label> + <input type="text" id="txt:studyname" name="studyname" + placeholder="Name of the study. (Required)" + required="required" + maxlength="100" + class="form-control" /> + <span class="form-text text-muted" id="help-study-name"> + Provide a name for the study.</span> + </div> + + <div class="form-group"> + <label for="txt:studyfullname" class="form-label">Full Study Name</label> + <input type="text" + id="txt:studyfullname" + name="studyfullname" + placeholder="Longer name of the study. (Optional)" + maxlength="100" + class="form-control" /> + <span class="form-text text-muted" id="help-study-full-name"> + Provide a longer, more descriptive name for the study. This is optional + and you can leave it blank. + </span> + </div> + + <div class="form-group"> + <label for="txt:studyshortname" class="form-label">Short Study Name</label> + <input type="text" + id="txt:studyshortname" + name="studyshortname" + placeholder="Shorter name of the study. (Optional)" + maxlength="100" + class="form-control" /> + <span class="form-text text-muted" id="help-study-short-name"> + Provide a shorter name for the study. This is optional and you can leave + it blank. + </span> + </div> + + <button type="submit" class="btn btn-primary">create study</button> + </form> +</div> + +{%endblock%} |