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+{%extends "phenotypes/base.html"%}
+{%from "cli-output.html" import cli_output%}
+{%from "flash_messages.html" import flash_all_messages%}
+{%from "macro-table-pagination.html" import table_pagination%}
+{%from "phenotypes/macro-display-pheno-dataset-card.html" import display_pheno_dataset_card%}
+
+{%block extrameta%}
+{%if job and job.status not in ("success", "completed:success", "error", "completed:error")%}
+<meta http-equiv="refresh" content="5" />
+{%endif%}
+{%endblock%}
+
+{%block title%}Phenotypes{%endblock%}
+
+{%block pagetitle%}Phenotypes{%endblock%}
+
+{%block lvl4_breadcrumbs%}
+<li {%if activelink=="add-phenotypes"%}
+ class="breadcrumb-item active"
+ {%else%}
+ class="breadcrumb-item"
+ {%endif%}>
+ <a href="{{url_for('species.populations.phenotypes.add_phenotypes',
+ species_id=species.SpeciesId,
+ population_id=population.Id,
+ dataset_id=dataset.Id)}}">View Datasets</a>
+</li>
+{%endblock%}
+
+{%block contents%}
+
+{%if job%}
+<h4 class="subheading">Progress</h4>
+<div class="row" style="overflow:scroll;">
+ <p><strong>Process Status:</strong> {{job.status}}</p>
+ {%if metadata%}
+ <table class="table table-responsive">
+ <thead>
+ <tr>
+ <th>File</th>
+ <th>Status</th>
+ <th>Lines Processed</th>
+ <th>Total Errors</th>
+ </tr>
+ </thead>
+
+ <tbody>
+ {%for file,meta in metadata.items()%}
+ <tr>
+ <td>{{file}}</td>
+ <td>{{meta.status}}</td>
+ <td>{{meta.linecount}}</td>
+ <td>{{meta["total-errors"]}}</td>
+ </tr>
+ {%endfor%}
+ </tbody>
+ </table>
+ {%endif%}
+</div>
+
+<div class="row">
+ {%if job.status in ("completed:success", "success")%}
+ <p>
+ {%if errors | length == 0%}
+ <a href="{{url_for('species.populations.phenotypes.review_job_data',
+ species_id=species.SpeciesId,
+ population_id=population.Id,
+ dataset_id=dataset.Id,
+ job_id=job_id)}}"
+ class="btn btn-primary"
+ title="Continue to process data">Continue</a>
+ {%else%}
+ <span class="text-muted"
+ disabled="disabled"
+ style="border: solid 2px;border-radius: 5px;padding: 0.3em;">
+ Cannot continue due to errors. Please fix the errors first.
+ </span>
+ {%endif%}
+ </p>
+ {%endif%}
+</div>
+
+<h4 class="subheading">Errors</h4>
+<div class="row" style="max-height: 20em; overflow: scroll;">
+ {%if errors | length == 0 %}
+ <p class="text-info">
+ <span class="glyphicon glyphicon-info-sign"></span>
+ No errors found so far
+ </p>
+ {%else%}
+ <table class="table table-responsive">
+ <thead style="position: sticky; top: 0; background: white;">
+ <tr>
+ <th>File</th>
+ <th>Row</th>
+ <th>Column</th>
+ <th>Value</th>
+ <th>Message</th>
+ </tr>
+ </thead>
+
+ <tbody style="font-size: 0.9em;">
+ {%for error in errors%}
+ <tr>
+ <td>{{error.filename}}</td>
+ <td>{{error.rowtitle}}</td>
+ <td>{{error.coltitle}}</td>
+ <td>{%if error.cellvalue | length > 25%}
+ {{error.cellvalue[0:24]}}&hellip;
+ {%else%}
+ {{error.cellvalue}}
+ {%endif%}
+ </td>
+ <td>
+ {%if error.message | length > 250 %}
+ {{error.message[0:249]}}&hellip;
+ {%else%}
+ {{error.message}}
+ {%endif%}
+ </td>
+ </tr>
+ {%endfor%}
+ </tbody>
+ </table>
+ {%endif%}
+</div>
+
+<div class="row">
+ {{cli_output(job, "stdout")}}
+</div>
+
+<div class="row">
+ {{cli_output(job, "stderr")}}
+</div>
+
+{%else%}
+<div class="row">
+ <h3 class="text-danger">No Such Job</h3>
+ <p>Could not find a job with the ID: {{job_id}}</p>
+ <p>
+ Please go back to
+ <a href="{{url_for('species.populations.phenotypes.view_dataset',
+ species_id=species.SpeciesId,
+ population_id=population.Id,
+ dataset_id=dataset.Id)}}"
+ title="'{{dataset.Name}}' dataset page">
+ the '{{dataset.Name}}' dataset page</a>
+ to upload new phenotypes or edit existing ones.</p>
+</div>
+{%endif%}
+{%endblock%}
+
+{%block sidebarcontents%}
+{{display_pheno_dataset_card(species, population, dataset)}}
+{%endblock%}