diff options
Diffstat (limited to 'uploader/templates/phenotypes/edit-phenotype.html')
| -rw-r--r-- | uploader/templates/phenotypes/edit-phenotype.html | 271 |
1 files changed, 142 insertions, 129 deletions
diff --git a/uploader/templates/phenotypes/edit-phenotype.html b/uploader/templates/phenotypes/edit-phenotype.html index 8b1642c..115d6af 100644 --- a/uploader/templates/phenotypes/edit-phenotype.html +++ b/uploader/templates/phenotypes/edit-phenotype.html @@ -25,165 +25,178 @@ <div class="row"> <h2 class="heading">edit phenotype data</h2> - <p>The two (2) forms provided in this page help you update the data for the + <p>The forms provided in this page help you update the data for the phenotypes, and the publication information for the phenotype, respectively.</p> </div> <div class="row"> - <h3 class="subheading">phenotype data</h3> - <form id="frm-edit-phenotype-data"> - <div style="max-height: 23.37em;overflow-y: scroll;"> - <table class="table table-striped table-responsive table-form-table"> - <thead style="position: sticky; top: 0;"> - <tr> - <th>#</th> - <th>Sample</th> - <th>Value</th> - {%if population.Family in families_with_se_and_n%} - <th>Standard-Error</th> - <th>Number of Samples</th> - {%endif%} - </tr> - </thead> - - <tbody> - {%for item in phenotype.data%} - <tr> - <td>{{loop.index}}</td> - <td>{{item.StrainName}}</td> - <td> - <input type="text" - name="value::{{item.DataId}}::{{item.StrainId}}" - value="{{item.value}}" - data-original-value="{{item.value}}" - class="form-control" /></td> - {%if population.Family in families_with_se_and_n%} - <td> - <input type="text" - name="se::{{item.DataId}}::{{item.StrainId}}" - value="{{item.error or ''}}" - data-original-value="{{item.error or ''}}" - class="form-control" /></td> - <td><input type="text" - name="n::{{item.DataId}}::{{item.StrainId}}" - value="{{item.count or ''}}" - data-original-value="{{item.count or "-"}}" - class="form-control" /></td> - {%endif%} - </tr> - {%endfor%} - </tbody> - </table> - </div> - <div class="form-group"> - <input type="submit" - name="submit" - class="btn btn-primary not-implemented" - value="update data" /> - </div> - </form> -</div> - -<div class="row"> - <h3 class="subheading">publication information</h3> - <p>Use the form below to update the publication information for this - phenotype.</p> - <form id="frm-edit-phenotype-pub-data" + <h3 class="subheading">Basic metadata</h3> + <form name="frm-phenotype-basic-metadata" + class="form-horizontal" method="POST" - action="#"> + action="{{url_for( + 'species.populations.phenotypes.edit_phenotype_data', + species_id=species.SpeciesId, + population_id=population.Id, + dataset_id=dataset.Id, + xref_id=xref_id)}}"> + <input type="hidden" name="phenotype-id" value="{{phenotype.Id}}" /> <div class="form-group"> - <label for="txt-pubmed-id" class="form-label">Pubmed ID</label> - <input id="txt-pubmed-id" name="pubmed-id" type="text" - class="form-control" /> - <span class="form-text text-muted"> - Enter your publication's PubMed ID. - </span> + <label for="txt-pre-publication-description" + class="control-label col-sm-2">Pre-Publication Description</label> + <div class="col-sm-10"> + <input type="text" + id="txt-pre-publication-description" + name="pre-publication-description" + class="form-control" + value="{{phenotype['Pre_publication_description'] or ''}}" /> + </div> </div> <div class="form-group"> - <label for="txt-publication-authors" class="form-label">Authors</label> - <input id="txt-publication-authors" name="publication-authors" - type="text" class="form-control" /> - <span class="form-text text-muted"> - Enter the authors.</span> + <label for="txt-pre-publication-abbreviation" + class="control-label col-sm-2">Pre-Publication Abbreviation</label> + <div class="col-sm-10"> + <input type="text" + id="txt-pre-publication-abbreviation" + name="pre-publication-abbreviation" + class="form-control" + value="{{phenotype['Pre_publication_abbreviation'] or ''}}" /> + </div> </div> <div class="form-group"> - <label for="txt-publication-title" class="form-label"> - Publication Title</label> - <input id="txt-publication-title" name="publication-title" type="text" - class="form-control" /> - <span class="form-text text-muted"> - Enter your publication's title.</span> + <label for="txt-post-publication-description" + class="control-label col-sm-2">Post-Publication Description</label> + <div class="col-sm-10"> + <input type="text" + id="txt-post-publication-description" + name="post-publication-description" + class="form-control" + value="{{phenotype['Post_publication_description'] or ''}}" /> + </div> </div> <div class="form-group"> - <label for="txt-publication-abstract" class="form-label"> - Publication Abstract</label> - <textarea id="txt-publication-abstract" name="publication-abstract" - class="form-control" rows="10"></textarea> - <span class="form-text text-muted"> - Enter the abstract for your publication.</span> + <label for="txt-post-publication-abbreviation" + class="control-label col-sm-2">Post-Publication Abbreviation</label> + <div class="col-sm-10"> + <input type="text" + id="txt-post-publication-abbreviation" + name="post-publication-abbreviation" + class="form-control" + value="{{phenotype['Post_publication_abbreviation'] or ''}}" /> + </div> </div> <div class="form-group"> - <label for="txt-publication-journal" class="form-label">Journal</label> - <input id="txt-publication-journal" name="journal" type="text" - class="form-control" /> - <span class="form-text text-muted"> - Enter the name of the journal where your work was published.</span> + <label for="txt-original-description" + class="control-label col-sm-2">Original Description</label> + <div class="col-sm-10"> + <input type="text" + id="txt-original-description" + name="original-description" + class="form-control" + value="{{phenotype['Original_description'] or ''}}" /> + </div> </div> <div class="form-group"> - <label for="txt-publication-volume" class="form-label">Volume</label> - <input id="txt-publication-volume" name="publication-volume" type="text" - class="form-control" /> - <span class="form-text text-muted"> - Enter the volume in the following format …</span> + <label for="txt-units" + class="control-label col-sm-2">units</label> + <div class="col-sm-10"> + <input type="text" + id="txt-units" + name="units" + class="form-control" + required="required" + value="{{phenotype['Units']}}" /> + </div> </div> <div class="form-group"> - <label for="txt-publication-pages" class="form-label">Pages</label> - <input id="txt-publication-pages" name="publication-pages" type="text" - class="form-control" /> - <span class="form-text text-muted"> - Enter the journal volume where your work was published.</span> + <div class="col-sm-offset-2 col-sm-10"> + <input type="submit" + name="submit" + class="btn btn-primary" + value="update basic metadata"> + </div> </div> + </form> +</div> - <div class="form-group"> - <label for="select-publication-month" class="form-label"> - Publication Month</label> - <select id="select-publication-month" name="publication-month" - class="form-control"> - {%for month in monthnames%} - <option value="{{month | lower}}" - {%if current_month | lower == month | lower%} - selected="selected" - {%endif%}>{{month | capitalize}}</option> - {%endfor%} - </select> - <span class="form-text text-muted"> - Select the month when the work was published. - <span class="text-danger"> - This cannot be before, say 1600 and cannot be in the future!</span></span> - </div> - <div class="form-group"> - <label for="txt-publication-year" class="form-label">Publication Year</label> - <input id="txt-publication-year" name="publication-year" type="text" - class="form-control" value="{{current_year}}" /> - <span class="form-text text-muted"> - Enter the year your work was published. - <span class="text-danger"> - This cannot be before, say 1600 and cannot be in the future!</span> - </span> +<div class="row"> + <h3 class="subheading">phenotype data</h3> + <form id="frm-edit-phenotype-data" + class="form-horizontal" + method="POST" + action="{{url_for( + 'species.populations.phenotypes.edit_phenotype_data', + species_id=species.SpeciesId, + population_id=population.Id, + dataset_id=dataset.Id, + xref_id=xref_id)}}"> + <div style="max-height: 23.37em;overflow-y: scroll;"> + <table class="table table-striped table-responsive table-form-table"> + <thead style="position: sticky; top: 0;"> + <tr> + <th>#</th> + <th>Sample</th> + <th>Value</th> + {%if population.Family in families_with_se_and_n%} + <th>Standard-Error</th> + <th>Number of Samples</th> + {%endif%} + </tr> + </thead> + + <tbody> + {%for item in phenotype.data%} + <tr> + <td>{{loop.index}}</td> + <td>{{item.StrainName}}</td> + <td> + <input type="text" + name="value-new::{{item.DataId}}::{{item.StrainId}}" + value="{{item.value}}" + class="form-control" /> + <input type="hidden" + name="value-original::{{item.DataId}}::{{item.StrainId}}" + value="{{item.value}}" /></td> + {%if population.Family in families_with_se_and_n%} + <td> + <input type="text" + name="se-new::{{item.DataId}}::{{item.StrainId}}" + value="{{item.error or ''}}" + data-original-value="{{item.error or ''}}" + class="form-control" /> + <input type="hidden" + name="se-original::{{item.DataId}}::{{item.StrainId}}" + value="{{item.error or ''}}" /></td> + <td> + <input type="text" + name="n-new::{{item.DataId}}::{{item.StrainId}}" + value="{{item.count or ''}}" + data-original-value="{{item.count or "-"}}" + class="form-control" /> + <input type="hidden" + name="n-original::{{item.DataId}}::{{item.StrainId}}" + value="{{item.count or ''}}" /></td> + {%endif%} + </tr> + {%endfor%} + </tbody> + </table> </div> <div class="form-group"> - <input type="submit" - name="submit" - class="btn btn-primary not-implemented" - value="update publication" /> + <div class="col-sm-offset-2 col-sm-10"> + <input type="submit" + name="submit" + class="btn btn-primary" + value="update data" /> + </div> </div> </form> </div> |