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{%extends "phenotypes/base.html"%}
{%from "flash_messages.html" import flash_all_messages%}
{%from "populations/macro-display-population-card.html" import display_population_card%}
{%block title%}Phenotypes{%endblock%}
{%block pagetitle%}Phenotypes{%endblock%}
{%block lvl4_breadcrumbs%}
<li {%if activelink=="edit-phenotype"%}
class="breadcrumb-item active"
{%else%}
class="breadcrumb-item"
{%endif%}>
<a href="{{url_for('species.populations.phenotypes.edit_phenotype_data',
species_id=species.SpeciesId,
population_id=population.Id,
dataset_id=dataset.Id,
xref_id=xref_id)}}">View Datasets</a>
</li>
{%endblock%}
{%block contents%}
{{flash_all_messages()}}
<div class="row">
<h2 class="heading">edit phenotype data</h2>
<p>The forms provided in this page help you update the data for the
phenotypes, and the publication information for the phenotype,
respectively.</p>
</div>
<div class="row">
<h3 class="subheading">Basic metadata</h3>
<form name="frm-phenotype-basic-metadata"
class="form-horizontal"
method="POST"
action="{{url_for(
'species.populations.phenotypes.edit_phenotype_data',
species_id=species.SpeciesId,
population_id=population.Id,
dataset_id=dataset.Id,
xref_id=xref_id)}}">
<input type="hidden" name="phenotype-id" value="{{phenotype.Id}}" />
<div class="form-group">
<label for="txt-pre-publication-description"
class="control-label col-sm-2">Pre-Publication Description</label>
<div class="col-sm-10">
<input type="text"
id="txt-pre-publication-description"
name="pre-publication-description"
class="form-control"
value="{{phenotype['Pre_publication_description'] or ''}}" />
</div>
</div>
<div class="form-group">
<label for="txt-pre-publication-abbreviation"
class="control-label col-sm-2">Pre-Publication Abbreviation</label>
<div class="col-sm-10">
<input type="text"
id="txt-pre-publication-abbreviation"
name="pre-publication-abbreviation"
class="form-control"
value="{{phenotype['Pre_publication_abbreviation'] or ''}}" />
</div>
</div>
<div class="form-group">
<label for="txt-post-publication-description"
class="control-label col-sm-2">Post-Publication Description</label>
<div class="col-sm-10">
<input type="text"
id="txt-post-publication-description"
name="post-publication-description"
class="form-control"
value="{{phenotype['Post_publication_description'] or ''}}" />
</div>
</div>
<div class="form-group">
<label for="txt-post-publication-abbreviation"
class="control-label col-sm-2">Post-Publication Abbreviation</label>
<div class="col-sm-10">
<input type="text"
id="txt-post-publication-abbreviation"
name="post-publication-abbreviation"
class="form-control"
value="{{phenotype['Post_publication_abbreviation'] or ''}}" />
</div>
</div>
<div class="form-group">
<label for="txt-original-description"
class="control-label col-sm-2">Original Description</label>
<div class="col-sm-10">
<input type="text"
id="txt-original-description"
name="original-description"
class="form-control"
value="{{phenotype['Original_description'] or ''}}" />
</div>
</div>
<div class="form-group">
<label for="txt-units"
class="control-label col-sm-2">units</label>
<div class="col-sm-10">
<input type="text"
id="txt-units"
name="units"
class="form-control"
required="required"
value="{{phenotype['Units']}}" />
</div>
</div>
<div class="form-group">
<div class="col-sm-offset-2 col-sm-10">
<input type="submit"
name="submit"
class="btn btn-primary"
value="update basic metadata">
</div>
</div>
</form>
</div>
<div class="row">
<h3 class="subheading">phenotype data</h3>
<form id="frm-edit-phenotype-data"
class="form-horizontal"
method="POST"
action="{{url_for(
'species.populations.phenotypes.edit_phenotype_data',
species_id=species.SpeciesId,
population_id=population.Id,
dataset_id=dataset.Id,
xref_id=xref_id)}}">
<div style="max-height: 23.37em;overflow-y: scroll;">
<table class="table table-striped table-responsive table-form-table">
<thead style="position: sticky; top: 0;">
<tr>
<th>#</th>
<th>Sample</th>
<th>Value</th>
{%if population.Family in families_with_se_and_n%}
<th>Standard-Error</th>
<th>Number of Samples</th>
{%endif%}
</tr>
</thead>
<tbody>
{%for item in phenotype.data%}
<tr>
<td>{{loop.index}}</td>
<td>{{item.StrainName}}</td>
<td>
<input type="text"
name="value-new::{{item.DataId}}::{{item.StrainId}}"
value="{{item.value}}"
class="form-control" />
<input type="hidden"
name="value-original::{{item.DataId}}::{{item.StrainId}}"
value="{{item.value}}" /></td>
{%if population.Family in families_with_se_and_n%}
<td>
<input type="text"
name="se-new::{{item.DataId}}::{{item.StrainId}}"
value="{{item.error or ''}}"
data-original-value="{{item.error or ''}}"
class="form-control" />
<input type="hidden"
name="se-original::{{item.DataId}}::{{item.StrainId}}"
value="{{item.error or ''}}" /></td>
<td>
<input type="text"
name="n-new::{{item.DataId}}::{{item.StrainId}}"
value="{{item.count or ''}}"
data-original-value="{{item.count or "-"}}"
class="form-control" />
<input type="hidden"
name="n-original::{{item.DataId}}::{{item.StrainId}}"
value="{{item.count or ''}}" /></td>
{%endif%}
</tr>
{%endfor%}
</tbody>
</table>
</div>
<div class="form-group">
<div class="col-sm-offset-2 col-sm-10">
<input type="submit"
name="submit"
class="btn btn-primary"
value="update data" />
</div>
</div>
</form>
</div>
{%endblock%}
{%block sidebarcontents%}
{{display_population_card(species, population)}}
{%endblock%}
|
