diff options
Diffstat (limited to 'scripts')
| -rw-r--r-- | scripts/load_phenotypes_to_db.py | 16 |
1 files changed, 10 insertions, 6 deletions
diff --git a/scripts/load_phenotypes_to_db.py b/scripts/load_phenotypes_to_db.py index 0797db5..0e7c5b6 100644 --- a/scripts/load_phenotypes_to_db.py +++ b/scripts/load_phenotypes_to_db.py @@ -115,13 +115,13 @@ def save_pheno_data( return save_phenotypes_data( conn, "PublishData", - (item for item in (item for items in (__row_to_dataitems__(dict(zip(_headers, line)), samples) for filecontent in (rqtl2.read_csv_file(path) for path in phenofiles) for idx, line in enumerate(filecontent) - if idx != 0))) + if idx != 0) + for item in items)) def save_phenotype_se( @@ -154,13 +154,13 @@ def save_phenotype_se( return save_phenotypes_data( conn, "PublishSE", - (item for item in (item for items in (__row_to_dataitems__(dict(zip(_headers, line)), samples) for filecontent in (rqtl2.read_csv_file(path) for path in sefiles) for idx, line in enumerate(filecontent) - if idx != 0))) + if idx != 0) + for item in items)) def save_phenotype_n( @@ -193,9 +193,13 @@ def save_phenotype_n( return save_phenotypes_data( conn, "NStrain", - (item for item in + (item for items in + (__row_to_dataitems__(dict(zip(_headers, line)), samples) + for filecontent + in (rqtl2.read_csv_file(path) for path in nfiles) for idx, line in enumerate(filecontent) - if idx != 0))) + if idx != 0) + for item in items)) def cross_reference_phenotypes_publications_and_data( |